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THE authoritative guide for clinical laboratory immunology
For nearly 50 years, the Manual of Molecular and Clinical Laboratory Immunology has been the premier resource for laboratories, students, and professionals involved in the clinical and technical details of diagnostic immunology testing. The 9th Edition continues its tradition of providing comprehensive clinical and technical information on the latest technologies used in medical and diagnostic immunology.
Led by a world-renowned group of authors and editors, this new edition reflects substantial changes aimed at improving and updating the Manual’s utility while reflecting the significant transformations that have occurred since the last edition, including the revolution of gene editing and the widespread adoption of molecularly engineered cellular therapies.
Topical highlights include:
The 9th Edition of the Manual of Molecular and Clinical Laboratory Immunology serves as an invaluable resource for laboratory directors, clinicians, laboratory managers, technologists, and students. It provides critical insights into the selection, application, and interpretation of immunologic tests, offering practical guidance on troubleshooting, clinical application, and an understanding of test limitations. This comprehensive and up-to-date manual remains an essential tool for anyone involved in the diagnosis, evaluation, and management of immune-mediated and immune system-related disorders.
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Veröffentlichungsjahr: 2024
Cover
Table of Contents
Volume 1
Title Page
Copyright Page
Editorial Board
Contributors
Preface
Author and Editor Conflicts of Interest
section A: Molecular Methods
1 Introduction
REFERENCES
2 Molecular Methods for Genetic Diagnosis of Inborn Errors of Immunity
INTRODUCTION
SEQUENCING TECHNIQUE PROGRESSION
PRE‐ AND POSTSEQUENCING CONSIDERATIONS
ADDITIONAL TECHNIQUES
FUTURE CONSIDERATIONS
ACKNOWLEDGMENTS
REFERENCES
3 Immunoglobulin and T‐Cell Receptor Gene Assessment
INTRODUCTION
PROTEIN STRUCTURE OF IMMUNOGLOBULIN
PROTEIN STRUCTURE OF THE T‐CELL RECEPTOR (TCR)
T‐ AND B‐CELL DEVELOPMENT
GENETIC STRUCTURE OF IMMUNOGLOBULINS AND T‐CELL RECEPTOR
IMMUNOGLOBULIN AND T‐CELL RECEPTOR GENE REARRANGEMENT
MOLECULAR METHODS FOR TCR AND IG REARRANGEMENT TESTING
CONCLUSIONS
REFERENCES
section B: Immunoglobulin Methods
4 Introduction
REFERENCES
5 Clinical Indications and Applications of Serum and Urine Protein Electrophoresis
BACKGROUND ON PROTEIN STRUCTURE
PRINCIPLES OF PROTEIN ELECTROPHORESIS
QUALITY CONTROL AND QUALITY ASSURANCE
PROTEINS IDENTIFIED IN SERUM PROTEIN ELECTROPHORESIS
PATTERN INTERPRETATION IN SERUM
QUANTIFICATION OF SERUM M‐PROTEINS
PATTERN INTERPRETATION IN URINE
DETECTION OF M‐PROTEINS IN THE URINE
CLINICAL APPLICATIONS
REFERENCES
6 Immunochemical Characterization of Immunoglobulins in Serum, Urine, and Cerebrospinal Fluid
BACKGROUND
LABORATORY INVESTIGATION
PATTERN INTERPRETATIONS AND CLINICAL DISORDERS
QUALITY CONTROL
URINE IMMUNOFIXATION
CEREBROSPINAL FLUID
REFERENCES
7 Cryoglobulins and Cryofibrinogenemia
CRYOGLOBULINS
CRYOFIBRINOGENS
REFERENCES
8 Strategy for Detecting and Following Monoclonal Gammopathies
CLASSIFICATION OF MONOCLONAL GAMMOPATHIES
OVERVIEW OF LABORATORY TESTS FOR MONOCLONAL GAMMOPATHIES
DIAGNOSTIC TESTING STRATEGIES FOR M‐PROTEINS IN SYMPTOMATIC PATIENTS
MONITORING M‐PROTEINS
STRATIFICATION OF RISK
SUMMARY
REFERENCES
section C: Complement
9 Introduction
REFERENCES
10 Methods of Complement Analysis
INTRODUCTION
PREANALYTICAL CONSIDERATIONS
DIAGNOSTIC WORKUP
METHODS OF MODERN COMPLEMENT ANALYSIS
OUTLOOK
REFERENCES
11 Assessing Complement Dysregulation in the Thrombotic Microangiopathies and Ultrarare Complement‐Mediated Kidney Disease
ALTERNATIVE PATHWAY OF COMPLEMENT
COMPLEMENT‐MEDIATED RENAL DISEASE
ATYPICAL HEMOLYTIC UREMIC SYNDROME
C3 GLOMERULOPATHY
CONCLUSIONS
ACKNOWLEDGEMENTS
REFERENCES
12 Current and Future of Complement Therapeutics and their Impact on the Clinical Immunology Laboratory
C1‐INIHIBITOR CONCENTRATES
ANTI‐C5 ANTIBODIES
ANTI‐C5a ANTIBODY
ANTI‐MASP‐2 ANTIBODY
CYCLIC PEPTIDE C3 INHIBITOR
SMALL‐MOLECULE C5a RECEPTOR ANTAGONIST
ANTI‐C1 ANTIBODIES
ORAL SMALL‐MOLECULE INHIBITORS
PEGYLATED RNA APTAMERS
RNA INTERFERENCE
ADENO‐ASSOCIATED VIRUS (AAV) GENE THERAPY
REFERENCES
section D: Flow Cytometry
13 Introduction: Clinical Flow Cytometry Applications and Quality Control
REFERENCES
14 Polychromatic Flow Cytometry
TECHNOLOGY
SAMPLE PREPARATION
QUALITY ASSURANCE AND QUALITY CONTROL
DATA ANALYSIS AND INTERPRETATION
FUTURE DIRECTIONS
REFERENCES
15 High‐Sensitivity Detection of Paroxysmal Nocturnal Hemoglobinuria by Multiparameter Flow Cytometry
INTRODUCTION
CLINICAL FEATURES OF PNH
WHO SHOULD BE TESTED FOR PNH?
COMPLEMENT BLOCKADE THERAPY AND DISEASE MONITORING IN PNH
EARLY METHODS TO TEST FOR PNH
EVOLUTION OF FLOW CYTOMETRIC METHODS TO DETECT PNH
ISSUES WITH EARLY FLOW METHODS
ROUTINE VERSUS HIGH‐SENSITIVITY FLOW CYTOMETRY
HIGH‐SENSITIVITY ASSAYS FOR PNH RED AND WHITE BLOOD CELLS
HIGH‐SENSITIVITY 2‐C ASSAY FOR PNH IN MATURE RBCs
ASSAYS FOR PNH WITHIN IMMATURE RBCs
HIGH‐SENSITIVITY 4‐COLOR (4‐C) WBC ASSAYS
HIGH‐SENSITIVITY 5‐COLOR (5‐C) WBC ASSAYS
HIGH‐SENSITIVITY 6‐COLOR (6‐C) WBC ASSAYS
IS FLAER ESSENTIAL FOR HIGH‐SENSITIVITY TESTING OF PNH WBCs?
CROSS‐PLATFORM 5‐, 6‐, AND 7‐COLOR SINGLE TUBE ASSAYS FOR PNH WBCs
CONSIDERATIONS FOR VERIFICATION OF HIGH‐SENSITIVITY PNH ASSAYS
CONSIDERATIONS FOR VALIDATION OF HIGH‐SENSITIVITY PNH ASSAYS
ONGOING QC AND QC MONITORS
REPORTING
REFERENCES
16 Standardized Flow Cytometry Assays for Enumerating CD34
+
Hematopoietic Stem Cells
INTRODUCTION
HEMATOPOIETIC STEM/PROGENITOR CELLS EXPRESS CD34 ANTIGEN
TRANSPLANTATION OF HEMATOPOIETIC STEM CELLS
CLINICAL ISSUES IN ENUMERATING STEM CELLS BY FLOW CYTOMETRY
EARLY METHODS TO MEASURE CD34
+
CELLS BY FLOW CYTOMETRY
STATISTICAL ISSUES IN RARE EVENT DETECTION
APPROPRIATE CONTROLS FOR RARE EVENT DETECTION
TECHNICAL ISSUES IN CD34
+
CELL ENUMERATION BY MULTIPARAMETER FLOW CYTOMETRY
CD34
+
CELL ENUMERATION USING SEQUENTIAL BOOLEAN GATING
THE BASIC ISHAGE PROTOCOL AND GATING STRATEGY
SINGLE‐PLATFORM ABSOLUTE CD34
+
CELL COUNTING
ISHAGE SINGLE‐PLATFORM INCLUDING VIABILITY ASSESSMENT
ISHAGE‐BASED COMMERCIAL KITS FOR CD34
+
CELL ENUMERATION
BENEFITS OF SINGLE‐PLATFORM CD34
+
CELL ENUMERATION
NEGATIVE ANTIBODY CONTROLS
LYSING AGENTS
ISSUES IN THE ANALYSIS OF POSTTHAWED SAMPLES
QUALITY ASSURANCE OF CD34
+
CELL ENUMERATION
SIMULTANEOUS ENUMERATION OF CD34
+
AND CD3
+
CELLS IN THE ALLOGENEIC TRANSPLANT SETTING
IMMUNOLOGICAL CHARACTERIZATION OF CD34
+
STEM CELLS
DOES ENUMERATING CD34
+
SUBSETS HAVE CLINICAL UTILITY?
CD34
+
CELL SUBSETS IN BACKUP MARROW OF POOR MOBILIZERS
USE OF PLERIXAFOR IN PATIENTS WHO FAIL TO MOBILIZE WITH G‐CSF
REFERENCES
17 The Detection of Fetal Red Cells in Fetomaternal Hemorrhage by Flow Cytometry
INTRODUCTION
APPLICATION OF THE ASSAY
PROCEDURE
SAFETY
EQUIPMENT/INSTRUMENTATION
PROCEDURE
QUALITY CONTROL/ASSURANCE
INTERPRETATION
ACKNOWLEDGMENTS
REFERENCES
18 Functional Flow Cytometry‐Based Assays of Myeloid and Lymphoid Functions for the Diagnostic Screening of Inborn Errors of Immunity
FLOW CYTOMETRIC EVALUATION OF PHOSPHORYLATED KINASE SUBSTRATES TO EVALUATE ABNORMALITIES IN IMMUNE SIGNALING PATHWAYS
CELL SURFACE ADHESION MARKER UPREGULATION AS A SCREEN FOR LAD‐1
MEASUREMENT OF THE UPREGULATION OF CD40 LIGAND ON ACTIVATED T CELLS AS A SCREENING DIAGNOSTIC TEST FOR CD40 LIGAND DEFICIENCY (FORMALLY KNOWN AS X‐LINKED HYPER IGM SYNDROME [XHIM])
A FLOW CYTOMETRY‐BASED OXIDATIVE BURST ASSAY AS A SCREEN FOR THE DIAGNOSIS OF CGD
MEASUREMENT OF ABNORMAL T CELL AND NK CELL CYTOTOXICITY AS AN AID IN THE DIAGNOSIS OF PATIENTS SUSPECTED OF HEMOPHAGOCYTIC LYMPHOHISTIOCYTOSIS SYNDROMES
MEASUREMENT OF CELL SURFACE CD278 EXPRESSION FOR THE DIAGNOSIS OF ICOS DEFICIENCY
SUMMARY
REFERENCES
19 Quality Assurance and Validation in Clinical Flow Cytometry
INTRODUCTION
REGULATION, ACCREDIDATION, AND QUALITY MANAGEMENT
STANDARDIZATION AND GUIDELINES
PROCEDURAL CODE STANDARDIZATION
REQUIREMENTS PRIOR TO ASSAY DEVELOPMENT AND VALIDATION
QUALITY ASSURANCE (QA)
CONCLUSION
REFERENCES
20 Future Cytometric Technologies and Applications
INTRODUCTION
PROS AND CONS OF THE TECHNOLOGIES
BEST APPLICATIONS FOR EACH TECHNOLOGY
IMAGING CYTOMETRY AS ANOTHER NEW FRONTIER
REFERENCES
section E: Functional Cellular Assays
21 Introduction
22 Cryopreservation of Blood Mononuclear Cells
TECHNICAL ASPECTS OF PBMC CRYOPRESERVATION, STORAGE, AND TRANSPORTATION
CELL QUALITY REQUIRED FOR IMMUNOLOGIC ASSAYS OF CRYOPRESERVED PBMCS
QUALITY CONTROL AND ADVANCES IN THE PROCESSING AND STORAGE OF CRYOPRESERVED PBMCs
REFERENCES
23 Functional Assays for B Cells and Antibodies
APPROACHES FOR ASSESSING B CELL FUNCTION
APPROACHES FOR ASSESSING ANTIBODY FUNCTION
ACKNOWLEDGMENTS
REFERENCES
24 Methods for Detection of Antigen‐Specific T Cells by Enzyme‐Linked Immunospot Assay
INTRODUCTION
ENZYME‐LINKED IMMUNOSPOT ASSAY (ELISPOT) PROTOCOL
METHODS OF ENHANCING ELISPOT SENSITIVITY
REFERENCES
25 Regulatory T Cell (Treg) Characterization
HUMAN CD4
+
REGULATORY T CELLS
CHARACTERISATION OF HUMAN CD4
+
TREG
TREG AND DISEASE
REFERENCES
26 Measurement of Natural Killer Cell Phenotype and Activity in Humans
INTRODUCTION
PROCEDURES
CONCLUSIONS
REFERENCES
27 Functional Assays for the Diagnosis of Chronic Granulomatous Disease
INTRODUCTION
ANALYSIS OF PMN H
2
O
2
PRODUCTION BY FLOW CYTOMETRY OF DIHYDRORHODAMINE 123 STAINING
ISOLATION AND CHARACTERIZATION OF PMN
HISTOCHEMICAL STAINING OF PMN WITH NITROBLUE TETRAZOLIUM
QUANTITATIVE ANALYSIS OF O
2
GENERATION USING SUPEROXIDE DISMUTASE‐INHIBITABLE FERRICYTOCHROME
c
REDUCTION
ANALYSIS OF PMN ROS GENERATION BY LUMINOL‐ENHANCED CHEMILUMINESCENCE
ANALYSIS OF gp91
phox
SURFACE EXPRESSION BY FLOW CYTOMETRY
FLOW CYTOMETRIC ANALYSIS OF PHOX PROTEIN EXPRESSION IN PERMEABILIZED CELLS
IMMUNOBLOT ANALYSIS OF PHOX SUBUNITS OF NOX2
CONCLUSION
ACKNOWLEDGEMENT
REFERENCES
28 Interferon Gamma Release Assays for Tuberculosis Diagnosis
QUANTIFERON ASSAY
TSPOT.TB
SUMMARY
REFERENCES
29 Methods for Evaluating Antigen‐Specific Cytotoxic T Lymphocyte Frequency and Activity
INTRODUCTION
FUNCTIONAL ASSAYS
QUANTITATIVE ASSAYS
REFERENCES
section F: Cytokines
30 Introduction
REFERENCES
31 Overview of the Cytokine Assay Multiverse
INTRODUCTION
CYTOKINE MEASUREMENTS AND MULTIPLEX PLATFORMS
OVERVIEW OF THE CYTOKINE MULTIVERSE: APPLICATIONS AND SYSTEM ASSAYS
CYTOKINE IL‐6 AND MULTIBIOMARKER DISEASE ACTIVITY
MULTIPLEX CYTOKINE ASSAYS AND COVID‐19
BEYOND MEASUREMENT: CYTOKINE SIGNALING CONVERSION AS AN IMMERSIVE IMMUNOTHERAPY TOOL
SUMMARY
ACKNOWLEDGEMENTS
REFERENCES
32 Monitoring Interferons in Autoimmune Diseases and Interferonopathies
INTRODUCTION
INTERFERONS IN THE ETIOLOGY OF AUTOIMMUNE DISEASES AND INTERFERONOPATHIES
IFNs IN DIAGNOSTICS
METHODS FOR IFN MEASUREMENT WITH POTENTIAL DIAGNOSTIC APPLICATION
REFERENCES
33 Detection of Anti‐Cytokine Autoantibodies and Clinical Applications
DETECTION STRATEGIES
FUNCTIONAL ASSAYS
ISOTYPE AND SUBCLASS ANALYSIS
TITER
MECHANISMS OF ACTION
OTHER DIAGNOSTIC CONSIDERATIONS
SUMMARY
ACKNOWLEDGMENTS
REFERENCES
section G: Laboratory Management
34 Licensure and Accreditation
INTRODUCTION
CLIA
35 Validation and Quality Control: General Principles and Application to the Clinical Immunology Laboratory
INTRODUCTION
GUIDELINES FOR ASSAY DEVELOPMENT AND VALIDATION
CLASSIFICATION OF ASSAYS
CLASSIFICATION ACCORDING TO PERFORMANCE CHARACTERISTICS
DEVELOPMENT AND VALIDATION
VALIDATION PARAMETERS
TOOLS TO MONITOR QUALITY
CONCLUDING REMARKS
REFERENCES
36 Quality Assurance and Quality Management of the Medical Laboratory
INTRODUCTION
QUALITY ASSURANCE PHASES OF CLINICAL TESTING: PREANALYTIC, ANALYTIC, POSTANALYTIC
INDIVIDUALIZED QC PLAN (IQCP)
ROLE OF PROFICIENCY TESTING (PT)/EQAS
DELTA CHECK, BIOLOGICAL VARIATION (BV) AND THE REFERENCE CHANGE VALUE (RCV)
NEW QM INITIATIVE IN THE MEDICAL LAB: ROLE OF THE DIAGNOSTIC MANAGEMENT TEAM (DMT)
THE CHOOSING WISELY CAMPAIGN
CONCLUDING DISCUSSION POINTS
REFERENCES
section H: Infectious Diseases Caused By Bacteria, Mycoplasmas, Chlamydiae, and Rickettsiae
37 Introduction
38 Diagnostic Methods for Group A Streptococcal Infections
INTRODUCTION
CLINICAL DESCRIPTION AND EPIDEMIOLOGY
DIAGNOSTIC METHODS
DETECTION OF ANTIBODIES TO EXTRACELLULAR ANTIGENS
RESEARCH‐USE‐ONLY TESTS
DETECTION OF ANTIBODIES TO CELLULAR ANTIGENS
CONCLUSIONS
REFERENCES
39 Laboratory Diagnosis of Syphilis
INTRODUCTION
CLINICAL FEATURES
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
METHODS
SEROLOGY
QUALITY CONTROL AND ASSURANCE
SYPHILIS TESTING ALGORITHMS
REFERENCES
40 Lyme Disease, Relapsing Fever, and Leptospirosis
INTRODUCTION
LYME BORRELIOSIS
RELAPSING FEVER
LEPTOSPIROSIS
REFERENCES
41 Immunological Tests in Tuberculosis
INTRODUCTION
CLINICAL DESCRIPTION
DIAGNOSIS
SCREENING TESTS FOR LATENT TB INFECTION
SEROLOGIC TESTS FOR ACTIVE TB INFECTION
REFERENCES
42
Mycoplasma
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
43 Chlamydia Infections
INTRODUCTION
CHLMAYDIA TRACHOMATIS
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
CHLAMYDIA PNEUMONIAE
CHLAMYDIA PSITTACI
REFERENCES
44 The
Rickettsiaceae
,
Anaplasmataceae
, and
Coxiellaceae
TAXONOMY
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
45 The
Bartonellaceae
,
Brucellaceae
, and
Francisellaceae
INTRODUCTION
TAXONOMY
EPIDEMIOLOGY
CLINICAL MANIFESTATIONS
LABORATORYDIAGNOSIS
REFERENCES
section I: Mycotic and Parasitic Diseases
46 Introduction
47 Immunological and Molecular Approaches for the Diagnosis of Parasitic Infections
INTRODUCTION
BLOOD AND TISSUE PARASITES
GASTROINTESTINAL PARASITES
REFERENCES
48 Serological Diagnosis of Fungal Infections
INTRODUCTION
METHODS USED FOR THE DIAGNOSIS OF FUNGAL INFECTIONS
SERODIAGNOSIS OF FUNGAL INFECTIONS
SUPPLIERS
ACKNOWLEDGMENTS
REFERENCES
section J: Viral Diseases
49 Introduction
50 Herpes Simplex Virus and Varicella‐Zoster Virus
INTRODUCTION
HSV CLINICAL DESCRIPTION
HSV EPIDEMIOLOGY
HSV DIAGNOSIS
HSV LABORATORY TESTING
VZV CLINICAL DESCRIPTION
VZV EPIDEMIOLOGY
VZV DIAGNOSIS
VZV LABORATORY TESTING
REFERENCES
51 Epstein‐Barr Virus and Cytomegalovirus
EPSTEIN‐BARR VIRUS (EBV)
CYTOMEGALOVIRUS (CMV)
REFERENCES
52 Human Herpesviruses 6A, 6B, 7, and 8
HHV‐6A/B
HHV‐7
HHV‐8
ACKNOWLEDGEMENT
REFERENCES
53 Parvovirus B19
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
54 Severe Acute Respiratory Syndrome Coronavirus‐2
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
55 Enteroviruses
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
56 Measles, Mumps, and Rubella Viruses
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
57 Viral Hepatitis
INTRODUCTION
HEPATITIS A VIRUS
HEPATITIS B VIRUS
HEPATITIS C VIRUS
HEPATITIS DELTA VIRUS
HEPATITIS E VIRUS
REFERENCES
58 Arboviruses
INTRODUCTION
CLINICAL PRESENTATION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
59 Hantavirus Infections
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
60 Rabies Virus
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
CONSIDERATIONS FOR WORKING WITH RABV
LABORATORY TESTING
ACKNOWLEDGMENTS
REFERENCES
61 Human T‐Cell Lymphotropic Virus Types 1 and 2
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
MOLECULAR DIAGNOSIS
REFERENCES
62 Human Immunodeficiency Virus
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
63 Bandavirus
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
REFERENCES
Volume 2
Title Page
Copyright Page
Editorial Board
Contributors
Preface
Author and Editor Conflicts of Interest
section K: ERRORS OF IMMUNITY
64 Introduction to Inborn Errors of Immunity
REFERENCES
65 Newborn Screening for Severe Combined Immunodeficiency
OVERVIEW
METHODOLOGY
FOLLOW‐UP OF ABNORMAL TREC NBS
CONFIRMATORY TESTING
PHYSIOLOGIC T CELL LYMPHOPENIA DUE TO PREMATURITY
DIAGNOSTIC TESTING
SECONDARY CONDITIONS
TREATMENT
FUTURE DIRECTIONS
DETECTION OF 22Q11.2 COPY NUMBER IN 22Q11.2 DELETION SYNDROME
CONCLUSION
REFERENCES
66 Combined Immunodeficiencies
INTRODUCTION
DIAGNOSTIC METHODOLOGIES
CLINICAL EXAMPLES
TREATMENT
CONCLUSIONS
REFERENCES
67 Predominantly Antibody Deficiencies
DISORDERS CHARACTERIZED BY PREDOMINANTLY ANTIBODY DEFICIENCIES
WHO SHOULD BE INVESTIGATED FOR PREDOMINANTLY ANTIBODY DEFICIENCIES: CLINICAL MANIFESTATIONS OF PREDOMINANTLY ANTIBODY DEFICIENCIES
MAJOR CATEGORIES OF PREDOMINANTLY ANTIBODY DEFICIENCIES
APPROACH TO EVALUATION OF PATIENTS WITH SUSPECTED PREDOMINANTLY ANTIBODY DEFICIENCIES
THE LABORATORY INVESTIGATION OF PREDOMINANTLY ANTIBODY DEFICIENCY
TREATMENT
GENETIC ANALYSIS
CONCLUSIONS
ACKNOWLEDGMENTS
REFERENCES
68 Primary Immune Regulatory Disorders
INTRODUCTION
GENERAL METHODOLOGY: PIRD DIAGNOSIS AND TESTING
CLINICAL EXAMPLES: KEY MONOGENIC PIRDS
FUTURE DIRECTIONS
REFERENCES
69 Primary Innate Immune Defects (Including Phagocytic Disorders, TLR Defects, and NK Cell Deficiencies)
INTRODUCTION
ASSESSMENT OF TLR DEFECTS PREDISPOSING PREDOMINANTLY TO BACTERIAL INFECTIONS
DISORDERS OF NF‐κB ACTIVATION AND REGULATION
PHAGOCYTIC DISORDERS
SPECIFIC GRANULE DEFICIENCY (SGD)
DISORDERS OF NEUTROPHIL CHEMOTAXIS
DEFECTS IN RAC2
NK CELL DEFECTS
CONCLUSION
REFERENCES
70 Systemic Autoinflammatory Diseases
INTRODUCTION
EPIDEMIOLOGY
DIAGNOSIS
CLINICAL DESCRIPTIONS
REFERENCES
71 Complement Defects
INFECTIONS
SYSTEMIC LUPUS ERYTHEMATOSUS
HEREDITARY ANGIOEDEMA
CHAPLE SYNDROME
COLD AGGLUTININ DISEASE
SUMMARY
REFERENCES
72 Inherited Bone Marrow Failure Syndromes: Focus on Immunodeficiency and Diagnostic Evaluation
INTRODUCTION
CLINICAL FEATURES
DIAGNOSTIC TESTING
MANAGEMENT
CONCLUSION
REFERENCES
73 Phenocopies of Inborn Errors of Immunity
INTRODUCTION
SOMATIC GENE VARIANTS
ANTI‐CYTOKINE AUTOANTIBODIES (ACAAbs)
COMPLEMENT RELATED AUTOANTIBODIES
LABORATORY ANALYSIS OF ANTI‐CYTOKINE AUTOANTIBODIES
THERAPEUTIC APPROACHES FOR ACAAbs
CONCLUSION
REFERENCES
section L: Allergic Diseases
74 Introduction to Allergic Diseases
REFERENCES
75 Quantitation and Standardization of Allergens
OVERVIEW OF
IN VIVO
ASSESSMENTS OF ALLERGEN POTENCY
ID
50
EAL TEST(13, 21)
OVERVIEW OF
IN VITRO
ASSAYS OF ALLERGEN POTENCY
TESTS FOR INDIVIDUAL ALLERGENS
TESTS OF OVERALL POTENCY
OVERVIEW OF ELISA INHIBITION, OR COMPETITION ELISA
IDENTITY TESTING
MASS SPECTROMETRY: ABSOLUTE QUANTIFICATION OF ALLERGENS IN ALLERGEN EXTRACTS
QUALITY MANAGEMENT SYSTEM (QMS) OF CBER’S ALLERGENIC REFERENCE REAGENT LABORATORY
ACKNOWLEDGMENTS
REFERENCES
76 Immunological Methods in the Diagnostic Allergy Laboratory
ANALYTES RELEVANT TO THE EVALUATION OF PATIENTS FOR ALLERGIC DISEASE
TOTAL SERUM IgE
ALLERGEN‐SPECIFIC IgE ANTIBODY
ALLERGEN‐SPECIFIC SERUM IgG AND IgG4 ANTIBODIES
CONCLUDING THOUGHTS
APPENDIX A
REFERENCES
77
In Vitro
Assay Methods for Measurement of Mediators and Markers of Allergic Inflammation
HISTAMINE
LIPID MEDIATORS
CYTOKINE GENERATION BY BASOPHILS
BASOPHIL SURFACE ACTIVATION MARKERS: CLINICAL INDICATIONS
MAST CELL‐SPECIFIC MEDIATORS AND MARKERS
DENDRITIC CELLS: INNATE IMMUNE RESPONSES
QUALITY ASSURANCE OF
IN VITRO
ASSAYS
SUMMARY
APPENDIX
REFERENCES
section M: Systemic Autoimmune Diseases
78 Introduction
79 Standardization of Fluorescent Antinuclear Antibody Testing
BACKGROUND: ANTINUCLEAR ANTIBODY IDENTIFICATION BY INDIRECT IMMUNOFLUORESCENCE
THE AUTOANTIBODY STANDARDIZATION COMMITTEE: THE GENERATION OF REFERENCE MATERIALS FOR FLUORESCENT ANTINUCLEAR ANTIBODY TESTING
ICAP ACTIVITIES AND THE CLINICAL RELEVANCE OF ICAP MATERIALS FOR ANA PATTERNS
REFERENCES
80 Immunodiagnosis and Laboratory Assessment of Systemic Lupus Erythematosus
AUTOANTIBODIES TO UBIQUITOUS CELLULAR ANTIGENS
AUTOANTIBODIES TO ANTIGENS WITH A RESTRICTED DISTRUBUTION
EVALUATION OF COMPLEMENT IN SLE
MEASURING THE TYPE I INTERFERON GENE EXPRESSION SIGNATURE IN SLE
REFERENCES
81 Immunodiagnosis of Autoimmune Myopathies
IP ANALYSIS OF PROTEIN COMPONENTS
IP ANALYSIS OF SMALL RNAs
ELISA USING RECOMBINANT MYOSITIS AUTOANTIGENS
COMMERCIALLY AVAILABLE IMMUNOASSAYS
FUTURE DIRECTIONS OF MSA TESTING
REFERENCES
82 Immunodiagnosis of Scleroderma
INTRODUCTION
SSc‐RELATED AUTOANTIBODIES
ANTICENTROMERE ANTIBODY (ACA)
ANTI‐TOPOISOMERASE I/Scl‐70 (TOPO I/Scl‐70) ANTIBODY
ANTI‐RNA POLYMERASE (RNAP) III ANTIBODY
ANTI‐U3 RIBONUCLEOPROTEIN (RNP)/FIBRILLARIN ANTIBODY
ANTI‐Th/To ANTIBODY
ANTI‐U11/U12 RIBONUCLEOPROTEIN (RNP) ANTIBODY
ANTI‐EUKARYOTIC INITIATION FACTOR 2B (eIF2B) ANTIBODY
ANTI‐PM‐Scl ANTIBODY
ANTI‐Ku ANTIBODY
ANTI‐RuvBL1/2 ANTIBODY
ANTI‐U1 RIBONUCLEOPROTEIN (RNP) ANTIBODY
NEW SSc‐RELATED AUTOANTIBODIES
AUTOANTIBODIES FOUND IN SSc PATIENTS BUT NOT SPECIFIC TO SSc
PATHOGENIC ROLES OF SSc‐RELATED AUTOANTIBODIES
SCREENING OF SSc‐RELATED AUTOANTIBODIES
METHODS FOR DETECTION OF INDIVIDUAL SSc‐RELATED AUTOANTIBODIES
ASSAY PROCEDURES OF IMMUNOASSAYS
MULTIPLEX TECHNOLOGIES FOR DETECTION OF SSc‐RELATED AUTOANTIBODIES
DETECTION OF MINOR SSc‐RELATED AUTOANTIBODIES
REFERENCES
83 Immunodiagnosis of Rheumatoid Arthritis
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
ACKNOWLEDGMENTS
REFERENCES
84 Antiphospholipid Antibody Syndrome
INTRODUCTION
USE OF THE ASSAY/USUAL CLINICAL APPLICATION
PROCEDURE
INTERPRETATION
REFERENCES
85 Immunodiagnosis of Systemic Vasculitis
ANCA‐ASSOCIATED VASCULITIS WITHIN THE SPECTRUM OF SYSTEMIC VASCULITIDES
HISTORIC PERSPECTIVE OF ANCA TESTING IN ANCA‐ASSOCIATED VASCULITIS
ANCA TESTING IN CLINICAL PRACTICE: THE REVISED 2017 INTERNATIONAL CONSENSUS
ANCA TESTING FOR FOLLOW‐UP OF PATIENTS WITH ANCA‐ASSOCIATED VASCULITIS
AUTOANTIBODIES IN IMMUNE COMPLEX SMALL‐VESSEL VASCULITIDES
FUTURE PERSPECTIVE FOR DIAGNOSTIC ANCA TESTING
REFERENCES
86 Immunodiagnosis of Sjögren’s Disease
INTRODUCTION
INFECTIOUS SEROLOGY
TISSUE‐SPECIFIC ANTIBODIES
NOT YET CLINICALLY AVAILABLE ANTIBODIES
COMPLEMENT COMPONENTS
CONCLUSION
ACKNOWLEDGEMENTS
REFERENCES
87 Diagnostic Testing for Deficiency of Adenosine Deaminase 2
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
ACKNOWLEDGEMENT
REFERENCES
88 Future Direction of Laboratory Testing for Autoimmune Diseases
INTRODUCTION
IMMUNOASSAYS FOR AUTOANTIBODY TESTING
COMPLEMENT, ACUTE‐PHASE REACTANTS, CYTOKINES, AND OTHER SOLUBLE MOLECULES
GENETICS, EPIGENETICS, AND GENE EXPRESSION
PHARMACOGENETICS
PRECISION MEDICINE, MULTIANALYTE TESTING, AND THE FUTURE OF AUTOIMMUNITY LABORATORY TESTING
QUALITY ASSESSMENT AND STANDARDIZATION IN AUTOIMMUNE LABORATORY TESTING
REFERENCES
section N: Organ‐Localized Autoimmune Diseases
89 Introduction
90 Endocrinopathies: Hashimoto Thyroiditis, Graves Disease, Hypophysitis, Addison Disease, Premature Ovarian Failure, Male Infertility, and Diabetes
AUTOANTIBODIES IN HASHIMOTO THYROIDITIS
AUTOANTIBODIES IN GRAVES DISEASE
AUTOANTIBODIES IN AUTOIMMUNE HYPOPHYSITIS
AUTOANTIBODIES IN ADDISON DISEASE
AUTOANTIBODIES IN PREMATURE OVARIAN FAILURE
AUTOANTIBODIES IN MALE INFERTILITY
AUTOANTIBODIES IN DIABETES
REFERENCES
91 Myasthenia Gravis
DEFINITION
EPIDEMIOLOGY
CLASSIFICATION
IMMUNOPATHOGENESIS OF AUTOIMMUNE MG
DIAGNOSIS
REFERENCES
92 Autoantibodies to Brain and Spinal Cord
INTRODUCTION
SYNDROMES ASSOCIATED WITH NEURAL AUTOANTIBODIES
NEURAL AUTOANTIBODIES
ACKNOWLEDGEMENTS
REFERENCES
93 Autoantibodies to Glycolipids in Peripheral Neuropathy
INTRODUCTION
TECHNOLOGY/INSTRUMENTATION
QUALITY ASSURANCE AND CONTROL
COST ASSESSMENT
INTERPRETATION
REFERENCES
94 Detection of Antimitochondrial Autoantibodies in Primary Biliary Cholangitis and Liver Kidney Microsomal Antibodies in Autoimmune Hepatitis
INTRODUCTION
PRIMARY BILIARY CHOLANGITIS (PBC)
REFERENCES
95 Cardiovascular Diseases
INTRODUCTION
AUTOIMMUNE CARDIOMYOPATHIES
AUTOIMMUNE ARRHYTHMIAS
AUTOIMMUNE VASCULOPATHIES
IMMUNOTHERAPY
GAPS IN KNOWLEDGE AND FUTURE PERSPECTIVES
REFERENCES
96 Use of Laboratory Tests for Patients with Inflammatory Bowel Diseases
INTRODUCTION
IBD, HEREDITY, AND GENETICS
VERY‐EARLY‐ONSET IBD AND GENETICS
ROLE OF SEROLOGY IN DIAGNOSIS AND CLINICAL ASSESSMENT
LABORATORY MEASUREMENT OF DISEASE ACTIVITY
THERAPEUTIC DRUG MONITORING
INFECTION PREVENTION
MAINTENANCE OF NUTRITION
SUMMARY
ACKNOWLEDGMENT
REFERENCES
97 Celiac Disease
INTRODUCTION
CELIAC DISEASE
PATHOLOGY
CLINICAL MANIFESTATIONS
EPIDEMIOLOGY
HISTORICAL PERSPECTIVE
DIAGNOSIS
HLA TYPING
BIOPSY
OVERVIEW OF TESTING RECOMMENDATIONS IN NORTH AMERICA
MONITORING AND MANAGEMENT OF CELIAC DISEASE
FUTURE DIRECTIONS
REFERENCES
98 Primary Membranous Nephropathy
HISTOLOGY
PLA2R
PODOCYTES
PLA2R STRUCTURE
CLINICAL PLA2R ANTIBODY ASSAYS
SPONTANEOUS REMISSION
COMPLEMENT
EPIDEMIOLOGY OF PLA2R ANTIBODY pMN
PLA2R ANTIBODY‐NEGATIVE pMN
REFERENCES
99 Autoantibodies Directed against Erythrocytes in Autoimmune Hemolytic Anemia and Other Anemias
AUTOIMMUNE HEMOLYTIC ANEMIA
LABORATORY INVESTIGATION
DIFFERENTIAL DIAGNOSIS OF AUTOIMMUNE HEMOLYTIC ANEMIA
AUTOANTIBODIES THAT INTERFERE WITH ERYTHROPOIESIS
REFERENCES
100 Immune Thrombocytopenia
INTRODUCTION
DIAGNOSIS
CLINICAL DESCRIPTION
PATHOPHYSIOLOGY OF ITP
LABORATORY TESTING
ACKNOWLEDGEMENTS
REFERENCES
101 Monitoring Autoimmune Reactivity within the Retina
IMMUNE REACTIVITY IN THE EYE
CLASSIC EXAMPLES OF AUTOIMMUNE DISEASE IN THE RETINA
RETINOPATHIES ASSOCIATED WITH ANTIRETINAL ANTIBODIES
LABORATORY MONITORING OF ANTIRETINAL ANTIBODIES
LABORATORY MONITORING OF T‐CELL REACTIVITY
SUMMARY AND FUTURE DIRECTIONS
REFERENCES
102 Diagnosis of Autoimmune Blistering Diseases
INTRODUCTION
EPIDEMIOLOGY
DIAGNOSTIC TOOLS FOR AIBD
CLINICAL AND DIAGNOSTICALLY RELEVANT IMMUNOPATHOLOGICAL CHARACTERISTICS OF THE MOST COMMON AIBDs
ACKNOWLEDGMENTS
REFERENCES
section O: Cancer
103 Introduction
104 Immunoassay‐Based Tumor Marker Measurement
EVALUATION OF TUMOR MARKER ASSAYS
UTILIZATION OF TUMOR MARKERS
IMMUNOASSAY DESIGN METHODS
TYPES OF IMMUNOASSAYS
CLINICAL TEST DESIGN: IDENTIFICATION OF APPROPRIATE ANTIBODIES
IMMUNOASSAY INTERFERENCES
EXAMPLES OF TUMOR MARKERS
NEW DEVELOPMENTS IN PROTEIN‐BASED TUMOR MARKER DISCOVERY
THE FUTURE OF TUMOR MARKERS
REFERENCES
105 Immune Monitoring during Cancer Immunotherapy
INTRODUCTION
TUMOR‐BASED ASSAYS
BLOOD‐BASED ASSAYS
BLOOD CORRELATES OF RESPONSE
SINGLE‐CELL ASSAYS
FUNCTIONAL ASSAYS FOR IMMUNE MONITORING
PROTEOMICS
DATA QC AND ANALYSIS IN IMMUNE MONITORING CLINICAL TRIALS
CONCLUSIONS
REFERENCES
106 Immunophenotyping by Flow Cytometry of Acute Lymphoblastic Leukemia/Lymphoma
INTRODUCTION
DIAGNOSIS
LABORATORY TESTING
SUMMARY
REFERENCES
107 Acute Myeloid Leukemia: Diagnosis and Measurable Residual Disease Detection by Flow Cytometry
CURRENT DIAGNOSTIC AND CLASSIFICATION SCHEME OF AML
FLOW CYTOMETRY IN THE DIAGNOSIS OF AML
POSTTHERAPY MONITORING OF MEASURABLE RESIDUAL DISEASE (MRD)
SUMMARY
REFERENCES
108 Chronic Lymphocytic Leukemia
INTRODUCTION
CLINICAL DESCRIPTION
EPIDEMIOLOGY
DIAGNOSIS
LABORATORY TESTING
MINIMAL/MEASURABLE RESIDUAL DISEASE (MRD) ASSESSMENT
REFERENCES
109 Evaluation of Plasma Cell Neoplasms
OVERVIEW OF ANTIBODY‐SECRETING CELL ORIGIN
LYMPHOMAS WITH PLASMABLASTIC PHENOTYPE
OTHER B CELL NEOPLASMS PRESENTING WITH PLASMA CELL EXPANSIONS
PRIMARY PLASMA CELL NEOPLASM CLASSIFICATION
A BRIEF INTRODUCTION TO CLINICAL INVESTIGATION OF THE PRIMARY PLASMA CELL NEOPLASMS
MORPHOLOGIC FINDINGS
SEROLOGIC AND URINE ANALYSIS
ROLE OF FLOW CYTOMETRY IN THE DIAGNOSIS OF PLASMA CELL NEOPLASMS
FLOW CYTOMETRY FOR PROGNOSTICATION OF PCN DISEASE COURSE AT DIAGNOSIS
REQUIREMENTS FOR BONE MARROW SAMPLE COLLECTION AND STORAGE
A BRIEF OVERVIEW OF THE QUANTITATIVE ASPECTS OF MRD DETERMINATION
ANTIBODY PANEL SELECTION AND ANALYSIS IN MYELOMA FC
MOLECULAR GENETIC MRD EVALUATION
SEROLOGIC TESTS FOR MRD
REMAINING CHALLENGES IN MRD DETECTION
REFERENCES
section P: Transplantation Immunology
110 Introduction: Immunogenetics, Histocompatibility Testing, and Transplantation
111 Human Leukocyte Antigen Biology and Genetics
INTRODUCTION
GENOMIC STRUCTURE AND GENE CONTENTS OF THE MHC REGION
HLA GENETIC CHARACTERISTICS
HLA NOMENCLATURE
HLA PROTEIN STRUCTURE
HLA EXPRESSION
HLA PROTEIN FUNCTION
REFERENCES
112 Human Leukocyte Antigen Genotyping for Allogeneic Transplantations
INTRODUCTION AND BACKGROUND
HLA TYPING FOR ALLOGENEIC HEMATOPOIETIC STEM CELL TRANSPLANTATIONS (HSCT)
HLA TYPING FOR SOLID ORGAN TRANSPLANTATION
OVERVIEW OF MOLECULAR HLA TYPING METHODS AND AMBIGUITY
HLA TYPING BY SNP‐BASED METHODS
HLA TYPING BY SANGER SEQUENCING
HLA TYPING BY NEXT‐GENERATION SEQUENCING
CONCLUDING REMARKS
ACKNOWLEDGMENT
REFERENCES
113 Human Leukocyte Antigen Antibodies
INTRODUCTION
HLA ANTIBODY TESTING FOR DIAGNOSIS AND PATIENT MANAGEMENT OF VARIOUS CLINICAL CONDITIONS
CLINICAL HLA ANTIBODY TESTING METHODS
CONCLUSION
REFERENCES
114 Non‐HLA Antibodies
INTRODUCTION
NON‐HLA ANTIBODIES IMPLICATED IN ALLOGRAFT REJECTION AND GRAFT LOSS
MECHANISMS OF NON‐HLA ANTIBODY FORMATION
MECHANISMS OF NON‐HLA ANTIBODY‐MEDIATED ALLOGRAFT INJURY
CLINICAL APPLICATION
PROCEDURE AND INTERPRETATION
QUALITY CONTROL (QC)/ASSURANCE (QA)
REFERENCES
115 ABO Blood Groups and Transplantation
INTRODUCTION
CLINICAL DESCRIPTION
LABORATORY TESTING
REFERENCES
116 Cellular Immune Responses in Transplantation
INTRODUCTION
CLINCIAL IMPLICATIONS
LABORATORY TESTING
REFERENCES
117 Molecular Characterization of Injury and Rejection in Solid Organ Transplant
CELL‐FREE DNA
CLINICAL APPLICATION OF DDCFDNA
GENE EXPRESSION PROFILING TECHNIQUES
CLINICAL APPLICATIONS OF TRANSCRIPTOMIC‐BASED METHODS
CONCLUDING REMARKS
REFERENCES
118 Killer Cell Immunoglobulin‐Like Receptors (KIR) in Clinical Transplantation
OVERVIEW OF NK CELLS AND KIR RECEPTORS
KIR IN HEMATOPOIETIC STEM CELL TRANSPLANTATION
KIR IN SOLID ORGAN TRANSPLANTATION
KIR GENOTYPING
CONCLUSION
REFERENCES
119 Chimerism Monitoring
INTRODUCTION
CLINICAL APPLICATION
PROCEDURE
INTERPRETATION OF MOLECULAR METHODS
QUALITY ASSURANCE
SUMMARY
REFERENCES
Index
End User License Agreement
Chapter 2
TABLE 1 Comparison of sequencing platforms
a
TABLE 2 Top 20 filtered genes with highest CADD scores
a
,
b
TABLE 3 Databases for variant frequency, genome browsers, and genomic varia...
Chapter 3
TABLE 1 Approximate number of human V(D)J gene segments used in TCR/Ig gene...
Chapter 5
TABLE 1 Location of radiocontrast and antibiotic spikes on capillary electr...
TABLE 2 Comparison of serum protein intervals by agarose and capillary zone...
TABLE 3 Reflex testing for suspicious bands
a
Chapter 6
TABLE 1 Reported migration characteristics of selected therapeutic monoclon...
TABLE 2 Protocol for urine concentration used at Beaumont Laboratory
Chapter 7
TABLE 1 Classification of cryoglobulins: frequency and concentration
TABLE 2 Classification of cryoglobulins: clinical and laboratory associatio...
TABLE 3 Laboratory abnormalities in cryoglobulinemia
Chapter 8
TABLE 1 Categorization of monoclonal gammopathies (Mayo Clinic 50‐year expe...
TABLE 2 Clinical features of MM at time of diagnosis
a
TABLE 3 IMWG criteria for MM
a
,
b
TABLE 4 Comparison of outcomes: IgM MGUS vs non‐IgM MGUS
a
TABLE 5 Total diagnostic interval for the ratio of free kappa/free lambda v...
TABLE 6 Diagnostic sensitivity of monoclonal gammopathy screening panels wi...
TABLE 7 International Myeloma Working Group criteria for response to therap...
Chapter 10
TABLE 1 Methods of clinical complement laboratory diagnostics
a,
b
TABLE 2 Assay formats, combined analytes, and sample types for research‐bas...
Chapter 11
TABLE 1 Interpretation of complement protein levels in complement‐mediated ...
TABLE 2 Autoantibody assays for C3G
a
Chapter 12
TABLE 1 Complement therapeutics
Chapter 14
TABLE 1 The most abundant families of antigens and the number of members wi...
TABLE 2 Summary of types of dyes used in flow cytometry
a
,
b
Chapter 15
TABLE 1 Recommended reagent conjugates for cross‐platform high‐sensitivity ...
TABLE 2 Recommended reagent conjugates for high‐sensitivity detection of PN...
TABLE 3 Recommended reagent conjugates for high‐sensitivity detection of PN...
TABLE 4 Recommended reagent conjugates for cross‐platform, 6‐, and 7‐C high...
Chapter 16
TABLE 1 Logical gate setup for Stem‐Kit on BD FACSCalibur (Fig. 1A and B)
TABLE 2 Commercial kits for CD34
+
cell enumeration
Chapter 17
TABLE 1 RhIG dose calculator
a
Chapter 18
TABLE 1 Functional flow cytometry‐based assays which have been used as aids...
Chapter 19
TABLE 1 Flow cytometry CPT codes
TABLE 2 Reagent stability
a
TABLE 3 External quality assessment (EQA)/proficiency testing (PT) programs
TABLE 4 Correlation of DPMO
a
Chapter 20
TABLE 1 Applications and preferred platforms
Chapter 23
TABLE 1 B cell markers used in flow cytometry
TABLE 2 Associations with humoral or B lymphocyte deficiencies
TABLE 3 Assays for measurement of B cells and antibodies
TABLE 4
In vitro
activators of B cell proliferation and immunoglobulin prod...
TABLE 5 Pneumococcal target strains for the MOPA
a
Chapter 24
TABLE 1 Methods of enhancing ELISPOT sensitivity
TABLE 2 Parameters influencing ELISPOT assay variability
TABLE 3 Methods of analyzing ELISPOT data
Chapter 25
TABLE 1 Essential phenotypic and functional characteristics of human FOXP3
+
Chapter 26
TABLE 1 Suggested antibody panels for protocol 1: adaptive NK cells and diff...
TABLE 2 Suggested antibody panels for protocol 2: granule constituents
TABLE 3 Suggested antibody panels for protocol 3: functional assay
TABLE 4 Genes associated with strong defects in NK cell development or func...
Chapter 27
TABLE 1 Tube setup for quantitative analysis of generation using superoxi...
TABLE 2 Volumes of specific anti‐phox antibody or nonspecific IgG
1
isotype ...
TABLE 3 Summary of assay characteristics
Chapter 28
TABLE 1 Positivity thresholds for the QuantiFERON‐TB Gold Plus (QFT‐Plus)
TABLE 2 Positivity thresholds for the T‐SPOT.TB test
Chapter 29
TABLE 1 Comparison of functional assays
TABLE 2 Comparison of quantitative assays
Chapter 32
TABLE 1 Characteristics of available IFN measurement methods
Chapter 33
TABLE 1 Anti‐cytokine autoantibody‐associated syndromes
a
Chapter 34
TABLE 1 CLIA‐approved accrediting organizations
TABLE 2 CLIA‐specified personnel positions
TABLE 3 CMS‐approved laboratory director qualifying board examinations
Chapter 35
TABLE 1 Assay validation or verification requirements per CLIA standard 493...
TABLE 2 Considerations prior to development or validation studies
TABLE 3 Example of acquisition requirements for rare event analysis
a
Chapter 36
TABLE 1 Basics of quality assurance (QA) measures
TABLE 2 Key focus areas of laboratory quality management (QM)
TABLE 3 Examples of medical laboratory regulatory agencies
TABLE 4 Selected clinical examples where clinical lab personnel can aid hea...
Chapter 38
TABLE 1 M serotypes associated with nonsuppurative sequelae
a
TABLE 2 Clinical manifestations of group A streptococcal infection and ARF...
TABLE 3 Host immune response to group A streptococcal infection
Chapter 39
TABLE 1 Nontreponemal serologic tests for syphilis
TABLE 2 Common treponemal antibody tests
a
Chapter 40
TABLE 1 Comparative sensitivity of different immunologic methods to detect ...
TABLE 2
Leptospira
species of the pathogenic and intermediate pathogenic gr...
Chapter 41
TABLE 1 Definition of a positive tuberculin test
TABLE 2 Methodological characteristics of T‐SPOT and QFT‐Gold Plus assays
TABLE 3 Pooled sensitivities and specificities of T‐SPOT, QFT‐GIT, and QFT‐...
Chapter 42
TABLE 1 Major commercial serologic test formats for
M. pneumoniae
Chapter 44
TABLE 1 Summary of representative human pathogens
Chapter 47
TABLE 1 Summary of FDA‐cleared serologic assays for
T. cruzi
a
TABLE 2 Sensitivity and specificity of diagnostic tests for
Entamoeba histo
...
TABLE 3 Commercially available molecular amplification panels with stool pa...
Chapter 48
TABLE 1 Commercially available antibody detection tests for fungal diseases...
TABLE 2 Commercially available antigen detection tests for fungal diseases...
Chapter 51
TABLE 1 Recommended laboratory tests for diagnosis and management of EBV in...
TABLE 2 EBV infection category according to patterns of EBV‐specific antibo...
TABLE 3 Laboratory tests for diagnosis and management of CMV infections
Chapter 52
TABLE 1 Biological characteristics of HHV‐6A, HHV‐6B, HHV‐7, and HHV‐8
TABLE 2 Epidemiologic and clinical characteristics of HHV‐6A, HHV‐6B, HHV‐7...
TABLE 3 Diagnostic methods for HHV‐6A/B, HHV‐7, and HHV‐8
Chapter 53
TABLE 1 Common clinical presentations of parvovirus B19 infection
Chapter 54
TABLE 1 Representative SARS‐CoV‐2 serology and adaptive immune response ass...
TABLE 2 Representative antigen assays
TABLE 3 Representative NAATs
a
TABLE 4 Representative point of care (POC) and over‐the‐counter (OTC) NAAT ...
Chapter 55
TABLE 1 Clinical specimens recommended for diagnostic testing
a
Chapter 57
TABLE 1 Characteristics of the five primary hepatitis viruses
TABLE 2 Clinical forms of hepatitis
TABLE 3 Algorithm and interpretation of serological and molecular tests for...
TABLE 4 Algorithm and interpretation of serological and molecular tests for...
TABLE 5 Algorithm and interpretation of serological and molecular tests for...
TABLE 6 Algorithm and interpretation of serological and molecular tests for...
TABLE 7 Algorithm and interpretation of serological and molecular tests for...
Chapter 58
TABLE 1 Medically important arboviruses that infect humans
a
TABLE 2 Clinical manifestations for select clinically relevant arboviruses ...
TABLE 3 Methodologies available for laboratory diagnosis of select acute ar...
Chapter 59
TABLE 1 Laboratory methods used for hantavirus diagnosis
a
Chapter 60
TABLE 1 Selected laboratory (fixed) strains of rabies virus
a
Chapter 61
TABLE 1 Interpretation of the recommended screening and confirmatory test r...
Chapter 62
TABLE 1 Major HIV proteins of diagnostic significance
TABLE 2 FDA‐approved laboratory HIV immunoassays
TABLE 3 FDA‐approved rapid and point‐of‐care HIV screening tests
TABLE 4 FDA‐approved nucleic acid assays and specimen requirements
a
TABLE 5 Viral RNA HIV‐1 resistance and tropism assays
Chapter 63
TABLE 1 Viruses in the genus
Bandavirus
Chapter 65
TABLE 1
S
econdary conditions with congenital T‐cell lymphopenia
TABLE 2 Urgent interventions for neonates with probable SCID or severe TCL ...
TABLE 3 Recommended medical treatment for infection prophylaxis
a
Chapter 66
TABLE 1 CIDs, their immunophenotypes, and select diagnostic tests
a
,
b
Chapter 67
TABLE 1 The main phenotypes of primary antibody deficiencies
a
TABLE 2 Inheritance of antibody deficiencies
a
TABLE 3 Markers defining B cell subsets
TABLE 4 Markers defining T cell subsets
Chapter 68
TABLE 1 Common diagnostic abnormalities in PIRDs
a
Chapter 69
TABLE 1 Summary of common innate immune defects, clinical manifestations, a...
TABLE 2 TLR targets and their ligands used in TLR functional testing to dia...
Chapter 70
TABLE 1 Systemic autoinflammatory disease (SAID) gene‐disease relationships...
Chapter 71
TABLE 1 Complement deficiencies
a
,
b
TABLE 2 Complement testing indicated for investigation of complement defect...
TABLE 3 Genes identified to cause monogenic lupus or lupus‐like disease
a
,
b
...
Chapter 72
TABLE 1 List of genes associated with inherited bone marrow failure syndrom...
Chapter 73
TABLE 1 Somatic pathogenic gene variants that result in an IEI phenocopy
a
TABLE 2 Anti‐cytokine and anti‐complement AAbs resulting in an IEI phenocop...
TABLE 3 Laboratory methods for analysis of anticytokine autoantibodies
a
Chapter 75
TABLE 1 Allergenic extracts currently standardized in the United States
a
Chapter 76
TABLE 1 Clinical conditions in which serological determination of IgE and I...
Chapter 79
TABLE 1 Summary of the clinical relevance of Hep‐2 IFA nuclear patterns
a,
b
...
TABLE 2 Summary of the clinical relevance of Hep‐2 IFA cytoplasmic patterns
TABLE 3 Summary of the clinical relevance of Hep‐2 IFA mitotic patterns
a
,
b
...
Chapter 80
TABLE 1 Some non‐DNA/chromatin autoantibodies useful in the diagnosis of sy...
TABLE 2 Prevalence of some non‐DNA/chromatin autoantibodies by disease
Chapter 81
TABLE 1 Clinical features associated with autoantibodies in autoimmune infl...
TABLE 2 Identification of myositis autoantibodies by IP analysis
a
,
b
TABLE 3 Summary of validation studies of LIA, ELISA, and PMAT in autoimmune...
Chapter 82
TABLE 1 Structure and function of molecules targeted by SSc‐related autoant...
TABLE 2 Methods for detection and clinical associations with SSc‐related au...
TABLE 3 Commercially available kits for detection of anti‐topo I/Scl‐70, AC...
TABLE 4 American College of Rheumatology/European League Against Rheumatism...
Chapter 83
TABLE 1 Occurrence of IgM RF and anti‐CCP2 among 2,825 patients in the Swed...
Chapter 84
TABLE 1 2023 ACR/EULAR APS clinical classification criteria
TABLE 2 2023 ACR/EULAR APS laboratory classification criteria
a
TABLE 3 APS
non
‐classification laboratory criteria
TABLE 4 Clinical conditions in which the search for aPL is required or sugg...
TABLE 5 Most common variables that may affect LA testing
Chapter 85
TABLE 1 Positioning of ANCA results in the 2022 ACR/EULAR classification cr...
TABLE 2 Comparison of ANCA assays by alignment of cutoff levels
a
,
b
TABLE 3 Harmonization of ANCA assays by likelihood ratios and alignment of ...
Chapter 86
TABLE 1 Immunological testing in Sjögren’s disease
a
Chapter 88
TABLE 1 Phenotypic associations of autoantibodies
a
TABLE 2 Autoantibodies that precede the clinical onset of autoimmune diseas...
TABLE 3 Monogenic defects leading to autoimmune phenotypes
a
Chapter 90
TABLE 1 Summary of techniques used to detect pituitary antibodies in human ...
TABLE 2 Summary of 42 cohort studies using indirect immunofluorescence and ...
Chapter 92
TABLE 1 Neurological syndromes associated with neural autoantibodies
a
TABLE 2 Autoantibody‐mediated encephalitis
TABLE 3 Neuronal and glial autoantibodies against intracellular antigens
a
TABLE 4 Neural autoantibodies against surface antigens
a
Chapter 93
TABLE 1 Clinical syndromes associated with specific antiglycolipid autoanti...
Chapter 94
TABLE 1 Summary of the 2‐oxo‐acid dehydrogenase mitochondrial antigens in P...
TABLE 2 Clinical characteristics of primary biliary cholangitis
TABLE 3 Diagnostic criteria of autoimmune hepatitis
a
TABLE 4 Heterogeneity of microsomal antigens
a
Chapter 95
TABLE 1 Summary of autoantibodies associated with cardiovascular diseases an...
Chapter 96
TABLE 1 Serologic markers available for patients with IBD
a
Chapter 97
TABLE 1 Diagnostic performance of available autoantibodies in celiac diseas...
Chapter 99
TABLE 1 Typical serologic characteristics in autoimmune hemolytic anemia (A...
TABLE 2 Interpretation of serologic findings in suspected cases of autoimmu...
TABLE 3 Immunofluorescence interpretation for GPCA testing
Chapter 100
TABLE 1 International ITP Working Group consensus recommendations for the d...
TABLE 2 Therapies for ITP
Chapter 101
TABLE 1 Antibody responses directed against retinal antigens in sera from p...
Chapter 102
TABLE 1 Target antigens, clinical signs, and diagnostic characteristics of ...
Chapter 104
TABLE 1 FDA‐approved protein tumor markers
TABLE 2 Assay interferences that cause falsely elevated or decreased tumor ...
Chapter 106
TABLE 1 WHO classification of lymphoblastic leukemia/lymphoma
a
TABLE 2 Phenotype‐genotype correlations in ALL
TABLE 3 Sample MRD flow cytometry panels in B‐ALL
a
Chapter 107
TABLE 1 Antibody panels for the evaluation of acute myeloid leukemia
a
Chapter 108
TABLE 1 Typical immunophenotype and differential diagnosis of CLL by flow c...
TABLE 2 Typical immunophenotype and differential diagnosis of CLL by immunoh...
TABLE 3 CLL IPI score sheet
TABLE 4 CLL IPI score predicting risk category
TABLE 5 Comparison between flow cytometry, PCR, and NGS for CLL MRD detectio...
Chapter 111
TABLE 1 Selected HLA associations with autoimmune diseases
a
TABLE 2 Selected HLA antigens/alleles associations with drug hypersensitivi...
Chapter 112
TABLE 1 Evolving NMDP requirements on confirmatory HLA typing performed at ...
Chapter 113
TABLE 1 Therapeutic drugs interfering in crossmatch assays
Chapter 114
TABLE 1 Non‐HLA antibodies implicated in allograft rejection and graft loss...
Chapter 115
TABLE 1 Compatible and incompatible combinations of blood groups for potent...
TABLE 2 Parallels between HLA and ABO antibody detection; common challenges...
Chapter 117
TABLE 1 Selected studies in the development of ddcfDNA as a marker for reje...
TABLE 2 Advantages and disadvantages of expression‐based technologies
Chapter 119
TABLE 1 List of CODIS STR loci
Chapter 2
FIGURE 1 Example of short‐ and long‐read sequencing. (A) Short‐read sequenci...
FIGURE 2 Alignment of NGS reads against a reference and variant identificati...
FIGURE 3 Heterozygous short structural variations. (Top) Short‐read sequenci...
FIGURE 4 RNA‐Seq data visualization. (Top) Transcript alignment across a gen...
FIGURE 5 Constraint scores from gnomAD for three genes. (A)
TLR5
demonstrate...
FIGURE 6 Filtering of variants from whole‐exome sequencing. Starting with al...
FIGURE 7 Use of protein domains and conservation to predict damaging variant...
FIGURE 8 Splicing motifs which may be mutated leading to disease. (Top) Line...
Chapter 3
FIGURE 1 Immunoglobulin structure. Immunoglobulins (Igs), the primary compon...
FIGURE 2 Structure of the αβ and γδ T‐cell receptor....
FIGURE 3 B‐cell receptor loci. The BCR comprises two identical κ...
FIGURE 4 αβ T‐cell receptor loci. The variable region of the...
FIGURE 5 Somatic V(D)J rearrangement of the B‐cell receptor (Ig). Somatic re...
FIGURE 6 Somatic V(D)J rearrangement of the T‐cell receptor α. ...
FIGURE 7 Representative clonal versus polyclonal patterns generated by PCR a...
FIGURE 8 Workflow of NGS‐based gene rearrangement testing for Ig and/or TCR....
FIGURE 9 Representative output data of NGS‐based TCR rearrangement testing. ...
Chapter 5
FIGURE 1 General structure of an amino acid. The R group determines the spec...
FIGURE 2 The peptide bond formation between two amino acids creates a dipept...
FIGURE 3 Serum has sharp separation of major protein bands on the electrophe...
FIGURE 4 (A) The capillary zone electropherogram pattern has two alpha‐1 ant...
FIGURE 5 The top panel shows a capillary zone electropherogram from a patien...
FIGURE 6 (A) This Levey‐Jennings chart monitors the daily variation of album...
FIGURE 7 Capillary zone electropherogram demonstrating a characteristic spli...
FIGURE 8 The left shows a capillary zone electropherogram pattern with a fla...
FIGURE 9 Evaluation of fluid for possible cerebral spinal fluid (CSF) origin...
FIGURE 10 A capillary zone electropherogram from a patient with nephrotic sy...
FIGURE 11 (A) Agarose gel electrophoresis with four samples. The bottom samp...
FIGURE 12 Representative normal capillary zone electropherogram with typical...
FIGURE 13 Capillary zone electropherogram with a prominent M‐protein spike (...
FIGURE 14 On the left, a capillary zone electropherogram demonstrates serum ...
FIGURE 15 On the left, a capillary zone electropherogram is shown from serum...
FIGURE 16 Capillary zone electropherogram demonstrating a broad increase in ...
FIGURE 17 This capillary zone electropherogram demonstrates a cirrhosis patt...
FIGURE 18 This capillary zone electropherogram demonstrates a nephrotic patt...
FIGURE 19 This agarose gel electrophoresis demonstrates 30 serum patterns. S...
FIGURE 20 This capillary zone electropherogram shows a prominent beta region...
FIGURE 21 This capillary zone electropherogram shows an increase in the C3 b...
FIGURE 22 Two capillary zone electropherogram patterns. On the left, the C3 ...
FIGURE 23 Measurement of M‐proteins, especially with underlying polyclonal b...
FIGURE 24 Several urine protein electrophoretic patterns are shown on concen...
FIGURE 25 A densitometric scan of an agarose gel is shown from a urine sampl...
FIGURE 26 A capillary zone electropherogram demonstrates the radiocontrast d...
Chapter 6
FIGURE 1 (A) Normal serum electropherogram; (B) normal serum immunofixation ...
FIGURE 2 (A) Electropherogram with monoclonal protein in gamma region; (B) i...
FIGURE 3 (A) Serum immunofixation gel with no staining in the lambda lane, d...
FIGURE 4 (A) Antigen excess present in IgM lane; (B) antigen excess present ...
FIGURE 5 (A) Normal serum immunosubtraction pattern; (B) immunosubtraction s...
FIGURE 6 (A) Electropherogram with polyclonal increase in gamma globulins; (...
FIGURE 7 (A) Rounded peak in beta‐gamma region representing increased polycl...
FIGURE 8 Serum immunofixation gel with both IgM lambda and IgG kappa monoclo...
FIGURE 9 Serum immunofixation gel with a free lambda monoclonal protein demo...
FIGURE 10 IgG heavy chain disease. (A) Immunosubtraction showing removal of ...
FIGURE 11 Sequential studies in a single patient. (A) Original PEP pattern. ...
FIGURE 12 Prominent oligoclonal banding. (A) Immunosubtraction; (B) immunofi...
FIGURE 13 Contrast medium artifact. (A) Electropherogram from capillary elec...
FIGURE 14 Shadow artifact on immunofixation gel caused by incomplete washing...
FIGURE 15 (A) A densitometric scan from concentrated urine showing a monoclo...
FIGURE 16 IFE on concentrated urine demonstrating a dominant free kappa and ...
FIGURE 17 (A) IFE on concentrated urine demonstrating a free kappa and free ...
FIGURE 18 Eight paired CSF (lanes 1 to 4 and 6 to 9) and sera (lanes 1′ to 4...
Chapter 7
FIGURE 1 Cryoglobulinemic vasculitis occurs when immunoglobulins are deposit...
FIGURE 2 Cryoglobulinemia was initially missed in a patient with cutaneous v...
FIGURE 3 Kinetics of cryoprecipitation, assessed by turbidimetric analysis, ...
FIGURE 4 Isolated washed cryofibrinogen (arrows) visualized by agarose gel e...
Chapter 8
FIGURE 1 (A) Densitometric scan from agarose gel electrophoresis of normal s...
FIGURE 2 (A) IEF on normal serum shows typical locations and broad distribut...
FIGURE 3 ISUB from a patient with IgGL M‐protein. The M‐protein spike is rem...
FIGURE 4 (A) Serum with decreased albumin, a prominent broad restriction in ...
FIGURE 5 (A) SPEP from a patient with AL amyloidosis with a normal electroph...
FIGURE 6 CAP guidelines (modified from Keren et al. 2022 [1]). *Additional t...
FIGURE 7 Measurements of 3 different pairs of serum samples by tangent skimm...
FIGURE 8 (A) SPEP revealing an increased total beta region with a beta‐2 (C3...
FIGURE 9 Average progress from SMM to MM for 417 patients based on the Mayo ...
Chapter 10
FIGURE 1 Spectrum of diseases either initiated or triggered by complement de...
FIGURE 2 Algorithm of complement analysis.
Chapter 11
FIGURE 1 The complement system, an important branch of innate immunity, prov...
FIGURE 2 (Top) Complement activity on host surfaces is prevented by both flu...
FIGURE 3 Environmental triggers of HUS include bacterial infections, viruses...
FIGURE 4 DDD and C3GN are driven by dysregulation of the C3 and C5 convertas...
Chapter 14
FIGURE 1 Schematics of the main components of a flow cytometer. A single‐cel...
FIGURE 2 Schematics of the voltage pulse and time delay. Area, height, and w...
FIGURE 3 Example of QC plots. On a daily basis, eight peak beads are run on ...
FIGURE 4 Illustration of Ficoll‐Hypaque and whole blood as samples to stain....
FIGURE 5 Summary tables of the most common fluorochromes used in flow cytome...
FIGURE 6 Illustration of the stain index. (A) Theoretical stain index (SI) r...
FIGURE 7 Illustration of titration of monoclonal antibody. An FCS format rep...
FIGURE 8 Tubes (staining) of CLIP panel organized by lineage. Black, markers...
FIGURE 9 Spectral cytometer 23‐color panel design. (A) Similarity index and ...
Chapter 15
FIGURE 1 (A) Instrument setup for a high‐sensitivity RBC assay on a BD FACSC...
FIGURE 2 Example of a 3‐C iRBC/mRBC assay; PNH sample stained with CD235a FI...
FIGURE 3 Example of 4‐C high‐sensitivity neutrophil assay. A sample from a l...
FIGURE 4 Example of PNH case stained with 4‐C high‐sensitivity monocyte assa...
FIGURE 5 (A) Example of normal sample stained with a 4‐C high‐sensitivity ne...
FIGURE 6 Example of a 5‐C single‐tube CD157‐based assay for PNH neutrophils ...
FIGURE 7 (A and B) Two samples containing type II neutrophils and monocytes....
FIGURE 8 Example of a CD157‐negative case. This represents a rare case in wh...
FIGURE 9 Example of a 6‐C single‐tube Navios assay for PNH neutrophils and m...
FIGURE 10 Example of a cross‐platform 7‐C assay on a Canto II cytometer; ana...
FIGURE 11 Generic reporting template for mRBCs, iRBCs, neutrophils, and mono...
Chapter 16
FIGURE 1 (A) Enumeration of viable CD34
+
cells with the single‐platform ISHA...
FIGURE 2 Enumeration of viable CD34
+
cells with Stem‐Kit on a Beckman Navios...
FIGURE 3 Enumeration of viable CD34
+
cells with Stem‐Kit on a Navios cytomet...
FIGURE 4 Absolute viable CD34
+
cell counting with the ISHAGE single‐platform...
FIGURE 5 Absolute viable CD34
+
cell counting with the ISHAGE single‐platform...
FIGURE 6 Absolute viable CD34
+
cell counting with the ISHAGE single‐platform...
FIGURE 7 Comparison of recovery of viable CD34
+
cells in a postthawed cord b...
FIGURE 8 Enumeration of CD34
+
cells in a stabilized peripheral blood sample ...
FIGURE 9 Simultaneous detection of absolute viable CD34
+
and CD3
+
cells usin...
FIGURE 10 Simultaneous enumeration of viable CD34
+
cells and viable CD3
+
cel...
FIGURE 11 Simultaneous enumeration of viable CD34
+
and viable CD3
+
cells in ...
FIGURE 12 Identifying CD34
+
cell subsets using the
CPC
support protocol (42,...
FIGURE 13 Identifying CD34
+
cell subsets in the marrow of poor mobilizer. CD...
Chapter 17
FIGURE 1 (A) log FSC‐A/log FSC‐H dot plot used for excluding doublets and ag...
FIGURE 2 (A and B) Normal control (A) results versus patient specimen result...
FIGURE 3 FSC/SSC dot plot. (A) RBCs with a primary gate (R1) drawn around th...
FIGURE 4 Histograms, assay values, and expected ranges for all FETALtrol 3‐l...
FIGURE 5 Histogram of a normal/negative control sample. There are few if any...
FIGURE 6 Patient test sample with FRBCs present within the R2‐statistical ga...
FIGURE 7 Summary of results of an FRBC flow panel showing the gate (R1) arou...
Chapter 18
FIGURE 1 Flow cytometry‐based LAD screening assay on a nondiseased healthy d...
FIGURE 2 Gating algorithm and histogram display of CD40‐ligand upregulation ...
FIGURE 3 The flow cytometry oxidative burst CGD screening assay performed on...
FIGURE 4 Example of the flow cytometry oxidative burst assay results for a C...
Chapter 19
FIGURE 1 The quality management system model for laboratory services: path o...
FIGURE 2 Factorial design for precision.
FIGURE 3 Level‐Jennings plots of flow cytometry instrument quality control d...
FIGURE 4 Linearity and the background signal of an unstained bead population...
FIGURE 5 Example QI metrics for percent late due to laboratory.
Chapter 21
FIGURE 1 Laboratory‐based assays related to functional cellular assays and t...
Chapter 22
FIGURE 1 Proliferation assays on cryopreserved PBMCs. (A) The effect of cryo...
FIGURE 2 Effect of viability on ELISPOT results using cryopreserved PBMCs. D...
FIGURE 3 Immunophenotypic assays using cryopreserved PBMCs. (A and B) The ef...
FIGURE 4 Effect of cryopreserved PBMC viability on functional responses meas...
FIGURE 5 Viability and recovery data for long‐term repository samples. Nine ...
FIGURE 6 CEF and CMV response for long‐term repository samples as measured b...
FIGURE 7 Effect of cell concentration in cryopreserved PBMCs on cell recover...
FIGURE 8 Effects of leukopak processing on ELISPOT functional response. Afte...
Chapter 25
FIGURE 1 Regulatory T cell (Treg) classification. Tr1 type 1 regulatory T ce...
FIGURE 2 Most common assays to interrogate the phenotype and function of Tre...
Chapter 26
FIGURE 1 (A) Gating strategy for flow cytometric analysis of CD56
dim
CD16
+
NK...
FIGURE 2 (A) Gating strategy for flow cytometric analysis of NK cells. The s...
FIGURE 3 Functional responses by CD3
–
CD56
dim
NK cells from patients an...
Chapter 27
FIGURE 1 Analysis of H
2
O
2
production by dihydrorhodamine 123 staining. PMN p...
FIGURE 2 Histochemical staining of PMN with NBT. (A) PMN from a healthy volu...
FIGURE 3 Analysis of PMN ROS generation by luminol‐enhanced chemiluminescenc...
FIGURE 4 Analysis of phox protein expression in permeabilized PMN by flow cy...
FIGURE 5 Immunoblot analysis of phox subunits of NOX2. DFP‐treated...
Chapter 33
FIGURE 1 Summary of anticytokine autoantibody detection assays. LIPS, lucife...
Chapter 35
FIGURE 1 Stages in assay development and validation.
FIGURE 2 Intra‐ and interassay precision for soluble CD25 measurement by ELI...
FIGURE 3 Calculation of LoB, LoD, and LoQ. LoD, LoB, and LoQ were calculated...
FIGURE 4 Example of a Levey‐Jennings chart. The sample mean is indicated by ...
FIGURE 5 Assay results were trended over the course of 12 months. The shaded...
Chapter 36
FIGURE 1 Preanalytical factors.
FIGURE 2 Analytical factors.
FIGURE 3 Postanalytical factors.
FIGURE 4 IQCP process.
Chapter 38
FIGURE 1 Schematic diagram of cellular and extracellular antigens of group A...
Chapter 39
FIGURE 1 Traditional algorithm. The traditional algorithm begins with a nont...
FIGURE 2 Reverse testing algorithm. Sera are first tested with a treponemal ...
Chapter 40
FIGURE 1 (A) Examples of positive Lyme IgM (lane 1) and IgG (lane 2) Western...
Chapter 41
FIGURE 1 (A) Tuberculin skin test. Intradermal injection of PPD (0.1 ml) on ...
FIGURE 2 Reading of the T‐SPOT TB test. The positive‐control mitogen should ...
Chapter 43
FIGURE 1 Example of culture positive for
Chlamydia trachomatis
, as confirmed...
FIGURE 2 Example of a positive microimmunofluorescence (MIF) serologic react...
Chapter 44
FIGURE 1 Taxonomy of representative human pathogens in the order
Rickettsial
...
Chapter 45
FIGURE 1 Taxonomy of the major human pathogens in the families
Bartonellacea
...
Chapter 48
FIGURE 1 Examples of ID results observed when a seven‐well agar gel pattern ...
FIGURE 2 Organization of the microtiter plates and results for the CF assay....
Chapter 51
FIGURE 1 Correlations between time of primary infection, disease expression,...
Chapter 53
FIGURE 1 Electron micrograph of serum from a patient with sickle cell diseas...
FIGURE 2 Virologic, immunologic, and clinical courses after parvovirus B19 i...
Chapter 54
FIGURE 1 SARS‐CoV‐2 disease course and diagnostics.
Chapter 55
FIGURE 1 Picornavirus phylogeny. The
Picornaviridae
family can be divided in...
FIGURE 2 Confirmed cases of acute flaccid myelitis (AFM) in the United State...
Chapter 57
FIGURE 1 Typical course of the virological and immunological manifestations ...
FIGURE 2 Virological profiles observed in patients infected with HBV. (Top) ...
FIGURE 3 Virological profiles observed in patients infected with HCV: the co...
FIGURE 4 Virological profiles observed in patients infected with HDV. There ...
Chapter 59
FIGURE 1 The time course of the clinical manifestations, laboratory findings...
Chapter 60
FIGURE 1 RABV genomic and virion structure. N designates the nucleoprotein, ...
FIGURE 2 Schematic representation of the RFFIT method to quantify serum VNA ...
Chapter 61
FIGURE 1 Representative examples of HTLV‐1‐positive and HTLV‐2‐positive WB p...
Chapter 62
FIGURE 1 Structure of the HIV virion. The HIV genome consists of three major...
FIGURE 2 Diagnostic HIV testing algorithm showing the sequence of follow‐up ...
FIGURE 3 Approximate time course (median, 25th,75th, and 99th percentiles) f...
Chapter 63
FIGURE 1 Genetic relatedness of the genus
Bandavirus
. The L protein amino ac...
FIGURE 2 Geographic distribution of virus strains in the genus
Bandavirus
. C...
Chapter 65
FIGURE 1 Schematic representation of the
TCRAD
locus and the formation of TR...
FIGURE 2 Example of an algorithm for managing an abnormal TREC NBS, assuming...
Chapter 66
FIGURE 1 Flow cytometry immunophenotyping results from a healthy control (to...
FIGURE 2 (A) The relative proportion of 24 different TCR Vβ...
FIGURE 3 (A) Flow cytometry analysis showing phosphorylated ATM (pATM) at 1 ...
Chapter 67
FIGURE 1 Extended B‐cell immunophenotyping. The fluorescence‐activated cell ...
FIGURE 2 Representative flow cytometry histograms of BTK protein expression ...
FIGURE 3 CD40L expression. Lymphocytes are defined by CD45 versus SSC. Prior...
FIGURE 4 XIAP and SAP by flow cytometry. Lymphocytes are defined based on FS...
Chapter 68
FIGURE 1 Clinical categorization of PIRDs, including relevant genes.
FIGURE 2 Autoinflammatory and hyperinflammatory PIRD gene defects.
FIGURE 3 Common autoimmune and lymphoproliferation clinical profile of PIRDs...
FIGURE 4 Representative immunohistological abnormalities noted in PIRDs. (A ...
FIGURE 5 (A to E) Illustrative flow cytometric T cell profile in PIRD, demon...
FIGURE 6 (A to D) Illustrative flow cytometric B cell profile in PIRD, inclu...
FIGURE 7 Flow cytometry plots of heathy control (HC) and hypomorphic
FOXP3
m...
FIGURE 8 JPM50.6 transfection test for novel CARD11 variants based on TCR‐in...
Chapter 69
FIGURE 1 IκBα degradation across TNF‐α concentrations measured...
FIGURE 2 Characteristic flow plots showing unstimulated granulocytes (blue) ...
FIGURE 3 Overview of the workflow for natural killer (NK) cell laboratory te...
Chapter 70
FIGURE 1
(
A) Pathogenesis of inflammasome‐mediated disorders. Gain of functi...
Chapter 71
FIGURE 1 Testing for complement defects may have three tiers. Suggested test...
FIGURE 2 Challenges associated with homologous gene regions using next‐gener...
FIGURE 3 Classification criteria for systemic lupus erythematosus updated by...
Chapter 72
FIGURE 1 An algorithmic approach to screen and diagnose patients with inheri...
Chapter 73
FIGURE 1 Anti‐cytokine autoantibodies, corresponding IEIs, and the spectrum ...
FIGURE 2 Laboratory analyses for anticytokine autoantibodies. Functional ana...
FIGURE 3 Flow cytometry analysis for neutralizing anti‐IFN‐γ...
Chapter 75
FIGURE 1 Sample calculation of D
50
. Serial 3‐fold dilutions of test material...
FIGURE 2 Hypothetical parallel line bioassay curves. In panel A, the bioassa...
FIGURE 3 Diameters are measured from the inner margins of the penned outline...
Chapter 77
FIGURE 1 Diagrammatic representation of preparation of peripheral blood baso...
Chapter 79
FIGURE 1 Nomenclature and classification tree of ANA patterns based on IFA o...
FIGURE 2 Example of Hep‐2 IFA test report according to the ICAP initiative g...
Chapter 80
FIGURE 1 Immunoprecipitation analysis of lupus autoantibodies. (A) Proteins...
Chapter 81
FIGURE 1 IP analysis of protein components of autoantigens recognized by aut...
FIGURE 2 IP analysis of RNA components of autoantigens recognized by autoant...
Chapter 82
FIGURE 1 Diagram showing SSc subsets stratified by autoantibodies. Areas of ...
FIGURE 2 Typical indirect immunofluorescence patterns on Hep‐2 cell slides. ...
FIGURE 3 Outline flowchart for identification of SSc‐related autoantibodies,...
Chapter 83
FIGURE 1 (A to C) Correlation between RF values obtained with non‐isotype‐sp...
FIGURE 2 (A and B) Distribution of levels of (A) IgM RF and (B) anti‐CCP in ...
Chapter 84
FIGURE 1 Main pathogenic mechanisms mediated by β2GPI‐dependent...
FIGURE 2 aPL as a risk factor for APS manifestation.
FIGURE 3 Anti‐CL and anti‐β2GPI ELISA principles....
Chapter 85
FIGURE 1 International consensus on ANCA testing in ANCA‐associated vasculit...
FIGURE 2 Autoantibody testing in small‐vessel vasculitis. Small‐vessel vascu...
Chapter 87
FIGURE 1 Illustration of adenosine metabolism and methods to detect ADA acti...
FIGURE 2 Sample data from spectrophotometric measurement of plasma ADA2 acti...
FIGURE 3 Plasma ADA2 measurement from healthy controls, carriers with monoal...
Chapter 88
FIGURE 1 Schematic representation of the structure of an immunoglobulin G wi...
FIGURE 2 Schematic representation of Western blot and immunoprecipitation us...
FIGURE 3 Schematic representation of multiplex immunoassays: planar arrays a...
FIGURE 4 Schematic representation of precision medicine steps highlighting h...
Chapter 90
FIGURE 1 Evolution of the TSHR antibody assay.
FIGURE 2 Detection of serum pituitary antibodies by indirect immunofluoresce...
FIGURE 3 Progression to diabetes in children positive for islet autoantibodi...
FIGURE 4 ICA and biochemically defined islet autoantibodies.
FIGURE 5 General outline of fluid‐phase 96‐well plate radiobinding assays fo...
FIGURE 6 Format of the electrochemiluminescence (ECL) assay. In the illustra...
FIGURE 7 Illustration of a multiplex ECL assay. The autoantibodies in serum ...
FIGURE 8 3‐Screen ICA ELISA assay principle. The figure has been reproduced ...
FIGURE 9 Workflow of ADAP. The serum is incubated with islet antigen conjuga...
Chapter 91
FIGURE 1 The fetal and adult AChR.
FIGURE 2 Mechanisms of antibody‐mediated MG (see text).
FIGURE 3 A recommended testing algorithm for MG diagnosis (see text).
Chapter 92
FIGURE 1 Neural and glial intracellular autoantibodies. The pictures show di...
FIGURE 2 Antibodies against neuronal surface antigens.
FIGURE 3 Immunohistochemical patterns of neuronal surface autoantibodies. Th...
FIGURE 4 Antigen‐specific tests for autoantibody detection. (A) Autoantibodi...
Chapter 93
FIGURE 1 Examples of clinically relevant ganglioside structures.
FIGURE 2 Standard antiganglioside ELISA pattern of ganglioside coating. Pair...
FIGURE 3 Screening plate layout with 4 patient samples per plate at a single...
FIGURE 4 Titration plate with 2 patient samples per plate, at 2 concentratio...
Chapter 94
FIGURE 1 Detection of AMAs by indirect immunofluorescence on HEp‐2 cells. No...
FIGURE 2 Reactivity of PBC sera with bovine heart mitochondria. Bovine heart...
FIGURE 3 Detection of liver kidney microsomal (LKM) and antimitochondrial an...
Chapter 95
FIGURE 1 Cardiac excitation‐contraction coupling. βAR,...
FIGURE 2 Autoantibodies and cardiomyopathies. ACM, arrhythmogenic cardiomyop...
FIGURE 3 Autoantibodies and cardiac arrhythmias. AF, atrial fibrillation; AT...
FIGURE 4 Autoantibodies and vasculopathies. αAR,
Chapter 96
FIGURE 1 IBD genes and their associated pathways in mucosal homeostasis.
FIGURE 2 TDM may not offer an advantage to patient management compared to cl...
FIGURE 3 Distribution of leukopenia frequency among patient groups with diff...
Chapter 97
FIGURE 1 Histologic grades of intestinal mucosa damage in patients with CD. ...
Chapter 98
FIGURE 1 Scanning electron micrograph of podocytes (P) wrapping around a glo...
FIGURE 2 The structure of PLA2R. CysR, cysteine rich domain; FnII, fibronect...
FIGURE 3 Cell‐based indirect immunofluorescence assay (CBA IFA) for positive...
FIGURE 4 Time course of PLA2R antibody in serum and kidney and clinical dise...
FIGURE 5 Thrombospondin type‐1 domain containing 7A (THSD7A) structure.
Chapter 100
FIGURE 1 Pathophysiology of ITP (adapted from reference 36). Multiple cells ...
FIGURE 2 Outline of the MAIPA (adapted from references 69–71). Platelets whi...
Chapter 101
FIGURE 1 Immunofluorescence staining for antiretinal antibodies. Frozen sect...
Chapter 102
FIGURE 1 Differential diagnosis of autoimmune blistering diseases based on d...
FIGURE 2 n‐Serrated pattern (left) and u‐serrated pattern (right) detected u...
FIGURE 3 Differential diagnosis of autoimmune blistering diseases based on t...
FIGURE 4 BIOCHIP mosaic for multivariate diagnostic testing of the most comm...
FIGURE 5 Clinical presentation of selected autoimmune bullous diseases. (A) ...
Chapter 104
FIGURE 1 (Left) Schematic diagram of a competitive binding (labeled‐antigen)...
FIGURE 2 Schematic diagram of a noncompetitive binding two‐site sandwich imm...
FIGURE 3 In immunometric assays, a Hook effect can occur when the capture an...
FIGURE 4 Schematic diagram showing result deviation from linearity that may ...
Chapter 105
FIGURE 1 Representative illustration of the various immune monitoring techno...
FIGURE 2 Illustration of the experimental assay setup geared at evaluating T...
Chapter 106
FIGURE 1 Normal B‐cell maturation in the bone marrow. Bone marrow aspirate s...
FIGURE 2 Normal T‐cell maturation in the thymus. Flow‐cytometric analysis of...
FIGURE 3 Lineage assignment of lymphoid progenitor populations. Peripheral b...
FIGURE 4 Comprehensive panel for diagnosis and MRD monitoring of B‐ALL. Bone...
FIGURE 5 Comprehensive panel for diagnosis and MRD monitoring of T‐ALL. Bone...
FIGURE 6 Example of B‐ALL MRD. Bone marrow aspirate sample. Compared to norm...
FIGURE 7 Example of T‐ALL MRD. Bone marrow aspirate sample. Compared to norm...
Chapter 107
FIGURE 1 Population identification and normal differentiation from stem cell...
FIGURE 2 Acute promyelocytic leukemia with
PML
::
RARA
fusion. The upper‐left ...
FIGURE 3 Acute myeloid leukemia with FLT3 ITD and NPM1 mutation. The upper‐l...
FIGURE 4 Detection of MRD for acute myeloid leukemia with a RAM‐phenotype by...
Chapter 108
FIGURE 1 Peripheral blood involvement by chronic lymphocytic leukemia/small ...
FIGURE 2 Three patterns of bone marrow involvement by chronic lymphocytic le...
FIGURE 3 Lymph node involvement by chronic lymphocytic leukemia/small lympho...
FIGURE 4 Diagnosing chronic lymphocytic leukemia (CLL) by flow cytometry. CL...
FIGURE 5 Minimal/measurable residual disease (MRD) detection by flow cytomet...
Chapter 109
FIGURE 1 Diagnostic algorithm and potential outcomes of evaluation for a sus...
FIGURE 2 Typical phenotypic findings in a primary plasma cell neoplasm (A) a...
FIGURE 3 Plasma cell neoplasm (magenta) lacking both informative CD38 and CD...
FIGURE 4 Phenotypic heterogeneity of normal plasma cells. Note the CD56
+
, CD...
FIGURE 5 Evaluation of sample hemodilution in an MM MRD sample. Note maturin...
Chapter 111
FIGURE 1 Gene map of the HLA region. White, gray, striped, and black boxes s...
FIGURE 2 HLA‐DR haplotype groups.
FIGURE 3 Nomenclature of HLA alleles.
FIGURE 4 Scheme and 3D structure of MHC class I (left) and class II (right) ...
Chapter 112
FIGURE 1 Commonly used HLA typing methods in contemporary histocompatibility...
FIGURE 2 HLA typing ambiguity in the context of typing methods and allele fr...
FIGURE 3 Various approaches to targeted NGS HLA typing (A) and bioinformatic...
Chapter 113
FIGURE 1 Mechanisms of antibody production and antibody‐mediated cell and ti...
FIGURE 2 CDC assay principle. (A) Assay set up. (B) Interpretation of PRA re...
FIGURE 3 Various formats for SPI assays and test setup.
FIGURE 4 HLA antibody detection and immunologic risk assessment for TRALI.
FIGURE 5 HLA antibody detection and immunologic risk assessment for PR.
FIGURE 6 HLA antibody detection and immunologic risk assessment for HCT.
FIGURE 7 HLA antibody detection and immunologic risk assessment for SOT. *Th...
FIGURE 8 Assay platform comparison. The same serum was tested by different a...
Chapter 114
FIGURE 1 Mechanisms of non‐HLA antibody generation and allograft injury. (A)...
FIGURE 2 Clinical assays to detect non‐HLA antibodies include both solid‐pha...
Chapter 115
FIGURE 1 ABH antigen subtypes and tissue distribution (46, 48, 85).
FIGURE 2 A‐subtype antigen expression in an A1 human heart (13).
FIGURE 3 A‐subtype antigen expression in an A1 human kidney (49).
FIGURE 4 Red blood cell suspension is added to serial doubling dilutions of ...
FIGURE 5 Numerous modifications exist to the ABO titer assay, including but ...
FIGURE 6 A comprehensive understanding of the ABO genotype, ABO phenotype an...
Chapter 116
FIGURE 1 Comparison of direct versus indirect allorecognition. Alloreactivit...
Chapter 117
FIGURE 1 Preparation of labeled complementary RNA (cRNA) proceeds through th...
Chapter 118
FIGURE 1 Natural killer (NK) cell recognition. NK cells are fast‐acting effe...
FIGURE 2 Killer cell immunoglobulin‐like receptors (KIRs). Fourteen distinct...
FIGURE 3 KIR haplotypes have variable gene content. Map of KIR haplotypes as...
FIGURE 4 The NK cells acquire functional maturation by interacting with thei...
Chapter 119
FIGURE 1 Donor and recipient loci examples of noninformative (both recipient...
Cover Page
Title Page
Copyright Page
Editorial Board
Contributors
Preface
Author and Editor Conflicts of Interest
Title Page
Copyright Page
Editorial Board
Contributors
Preface
Author and Editor Conflicts of Interest
Table of Contents
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608
609
610
611
612
613
614
615
616
622
617
618
619
620
621
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
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641
642
643
644
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646
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648
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650
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656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
iii
iv
xi
xiii
xiv
xv
xvi
xvii
xviii
xix
xx
xxi
xxii
xxiii
xxiv
xxv
xxvi
679
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
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705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
845
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
879
880
881
882
883
884
885
886
887
888
889
890
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895
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899
900
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904
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906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950