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Michael Pawlus

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Beschreibung

Explore and implement deep learning to solve various real-world problems using modern R libraries such as TensorFlow, MXNet, H2O, and Deepnet




Key Features



  • Understand deep learning algorithms and architectures using R and determine which algorithm is best suited for a specific problem


  • Improve models using parameter tuning, feature engineering, and ensembling


  • Apply advanced neural network models such as deep autoencoders and generative adversarial networks (GANs) across different domains



Book Description



Deep learning enables efficient and accurate learning from a massive amount of data. This book will help you overcome a number of challenges using various deep learning algorithms and architectures with R programming.






This book starts with a brief overview of machine learning and deep learning and how to build your first neural network. You'll understand the architecture of various deep learning algorithms and their applicable fields, learn how to build deep learning models, optimize hyperparameters, and evaluate model performance. Various deep learning applications in image processing, natural language processing (NLP), recommendation systems, and predictive analytics will also be covered. Later chapters will show you how to tackle recognition problems such as image recognition and signal detection, programmatically summarize documents, conduct topic modeling, and forecast stock market prices. Toward the end of the book, you will learn the common applications of GANs and how to build a face generation model using them. Finally, you'll get to grips with using reinforcement learning and deep reinforcement learning to solve various real-world problems.






By the end of this deep learning book, you will be able to build and deploy your own deep learning applications using appropriate frameworks and algorithms.




What you will learn



  • Design a feedforward neural network to see how the activation function computes an output


  • Create an image recognition model using convolutional neural networks (CNNs)


  • Prepare data, decide hidden layers and neurons and train your model with the backpropagation algorithm


  • Apply text cleaning techniques to remove uninformative text using NLP


  • Build, train, and evaluate a GAN model for face generation


  • Understand the concept and implementation of reinforcement learning in R



Who this book is for



This book is for data scientists, machine learning engineers, and deep learning developers who are familiar with machine learning and are looking to enhance their knowledge of deep learning using practical examples. Anyone interested in increasing the efficiency of their machine learning applications and exploring various options in R will also find this book useful. Basic knowledge of machine learning techniques and working knowledge of the R programming language is expected.

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Hands-On Deep Learning with R

 

 

A practical guide to designing, building, and improving neural network models using R

 

 

 

 

 

 

 

 

 

Michael Pawlus
Rodger Devine

 

 

 

 

 

 

 

 

 

 

BIRMINGHAM - MUMBAI

Hands-On Deep Learning with R

 

Copyright © 2020 Packt Publishing

All rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, without the prior written permission of the publisher, except in the case of brief quotations embedded in critical articles or reviews.

Every effort has been made in the preparation of this book to ensure the accuracy of the information presented. However, the information contained in this book is sold without warranty, either express or implied. Neither the authors, nor Packt Publishing or its dealers and distributors, will be held liable for any damages caused or alleged to have been caused directly or indirectly by this book.

Packt Publishing has endeavored to provide trademark information about all of the companies and products mentioned in this book by the appropriate use of capitals. However, Packt Publishing cannot guarantee the accuracy of this information.

Commissioning Editor: Veena PagareAcquisition Editor:Ali AbidiContent Development Editor: Joseph SunilSenior Editor: Roshan KumarTechnical Editor: Manikandan KurupCopy Editor: Safis EditingProject Coordinator: Aishwarya MohanProofreader: Safis EditingIndexer:Priyanka DhadkeProduction Designer:Aparna Bhagat

First published: April 2020

Production reference: 1230420

Published by Packt Publishing Ltd. Livery Place 35 Livery Street Birmingham B3 2PB, UK.

ISBN 978-1-78899-683-9

www.packt.com

I dedicate this book to my grandma, Shirley Pawlus, who passed away during the writing process. I know she would have loved seeing this in print. Also my parents, Mike and Cathy, who lead by example in showing the value of living a life where integrity and a strong work ethic are absolute requirements at all times. My incredible wife, Sheila Newton, for patiently supporting me and giving me the time and space to write. My amazing children, Esme and Grayson, for being constant sources of joy and inspiration. My siblings, Brad and Nicole, two of the funniest people on the planet. Their incredible families: my sister-in-law Mai, brother-in-law Jeff, nieces and nephews Ilo, Moni, Noka, Otis, and Oscar. I also wish to express my gratitude to my friends and co-workers involved throughout this process who provided me with encouragement, motivation, and opportunities for growth: Steph Vaver, Molly Schmied, Megan Stanley, Justin Fincher, Maureen Henry, Jordan Zivoder, Skye Wanstrath, Don Callahan, Jon Gerckens, Danielle Huskey, Courtney Moore, Natasha Morrison, Christy Myers, Mike Parry, Doug Plummer, Sam Sheth, Staci Hostetler, Ashutosh Nandeshwar, Susan Engel, Jing Zhou, Ritu Jain, Rodger Devine, Jessica Cho, Christine Van Dort, Maria Barrera, Jaime Miranda, James Sinclair, Joe Gonzales, Steve Grimes, Rich Majerus, Mirabai Auer, John Gough, Marianne Pelletier, Jen Filla, Emma Hinke, Barron Cato, Jake Tolbert, Sam Wren, Brett Lantz, Carrick Davis, Mark Egge, John Gormaly, Mary Darrow, Martin Lane, Tom Flood, Julie Pape, Judy Hurley, Karen Heil, Alexis Renwanz, Daniel Berumen, Anna Snyder, Morgan Green, Stuart Kirk, Greg Bennett, Satkartar Khalsa, November Project Columbus, November Project LA, the entire November Project Family, Scott Stanislav, Brian McDonald, Jen McDonald, Ryan Laird, Will Rein, Tony Kempski, Andy Nelson, and I'm sure there are others besides. If I forgot, you know who you are and please forgive me. I am thankful to have crossed paths with so many phenomenal humans. This is for all of you.
– Michael Pawlus

 

I would like to dedicate this book to my father, Rodger A. Devine, for always encouraging me to share knowledge to help others, and my beloved piano teacher, Katherine Teves, for inspiring me to see the forest for the trees and tap into my creativity to solve problems. Many thanks to all of my friends, family, colleagues, teachers, and mentors for their inspiration, encouragement, and support throughout the process of writing this book, including Alessio Frenda, Amy Turbes, Anita Lawson, Andrew Mortensen, Anne Brownlee, Anthony Maddox, Apra Community and Staff, Ariane Reister, Ashley Budd, Ashutosh Nandeshwar, Barron Cato, Bond Lammey, Bob Burdenski, Bob Jones, Brett Lantz, Caroline Chang, Carrie White, Carrick Davis, Caroline Oblack, CASE DRIVE/planning committee and staff, Chandra Montgomery, Cheryl Williams, Christina Hendershaw, Christine Van Dort, Crystal Taylor, the Dornsife Advancement Team, Emily DeYoung, Emily Walsh, Emma Hinke, Fabian Primera, Gareth Griffin, Heather Campbell, Heather Grieg, Henry Lau, Hui Cha "Kim" Devine, Jaime Miranda, James Sinclair, James Cheng, Jarrod Van Kirk, Jay Dillon, Jeff Kelley, Jennifer Cunningham, Jennifer Maccormack, Jennifer Liu-Cooper, Jill Meister, Jing Zhou, Jo Theodosopoulos, Joe Person, John Taylor, Josh Birkholz, Josh Jacobson, Karen Isble, Kate Weber, Kevin Coates, Kevin Corbett, Kevin Jones, Kim "McData" McDade, Kim Jacobson, Lauren Dixson, Laurent "Lo" de Janvry, Leah Nickel, Linda Pavich, Lindsey Nadeau, Liz Regan Jones, Liz Rejman, Mandy Simon, Maria Barrera, Marianne Pelletier, Marissa Todd, Mark Egge, Megan Doud, Melissa Bank-Stepno, Michael Pawlus, Milagro "Misa" Lobato, Nathan Gulick, Nedra Newton-Jones, Nicole Ferguson, OCL Cohort 13, Pat Tobey, Patrick Franklin, Paul Worster, Peter Wylie, the Public Exchange "Tiger" Team, Qiaozhu Mei, Rich Majerus, Robin Rone, Rose Romani, Ryan Donnelly, Salijo Hendershaw, Sam Jones, Sarah Barr, Sarah Daly, Shahan Sanossian, Shalonda Martin, Steve Grimes, Susan Engel, Susan Hayes McQueen, Tadd and Nayiri Mullinix, Tanya Kern, Terri Devine, Todd Osborn, Tracey Church, U-M School of Information, USC Advancement, Will Winston, and countless others. Together, we can go further.
– Rodger Devine
 

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Contributors

About the authors

Michael Pawlus is a data scientist at The Ohio State University, where he is currently part of the team responsible for building the data science infrastructure for the advancement department, while also heading up the implementation of innovative projects there. Prior to this, Michael was a data scientist at the University of Southern California. In addition to this work, Michael has chaired data science education conferences, published articles on the role of data science within fundraising, and currently serves on committees where he is focused on providing a wider variety of educational offerings as well as increasing the diversity of content creators in this space. He holds degrees from Grand Valley State University and the University of Sheffield.

I want to thank everyone who has supported and encouraged me throughout the writing of this book, especially my wife, Sheila, for going out of her way to give me the time and space to finish this project.

 

 

 

Rodger Devine is the Associate Dean of External Affairs for Strategy and Innovation at the USC Dornsife College of Letters, Arts, and Sciences. Rodger's portfolio includes advancement operations, BI, leadership annual giving, program innovation, prospect development, and strategic information management. Prior to USC, Rodger served as the Director of Information, Analytics, and Annual Giving at the Michigan Ross School of Business. He brings with him nearly 20 years of experience in software engineering, IT operations, BI, project management, organizational development, and leadership. Rodger completed his masters in data science at the University of Michigan and is a doctoral student in the OCL program at the USC Rossier School of Education. 

Thanks to all of my friends, family, colleagues, and mentors for their continued support, patience, and encouragement throughout the process of writing this book, especially Alessio Frenda, Joe Person, Kim Jacobson, and Todd Osborn.

About the reviewers

Over the last 12 years, Sray Agrawal has been working as a data scientist and acquiring experience in a variety of domains. He has had experience of working in BFSI, e-commerce, retail, telecommunications, hospitality, travel, education, real estate, entertainment, and in many others sectors besides. He is currently working for Publicis Sapient as a data scientist, based in London. His expertise lies in predictive modeling, forecasting, and advanced machine learning. He possesses a deep understanding of algorithms and advanced statistics. He has a background in management and economics and has undertaken a masters-equivalent program in data science and analytics. He is also a certified predictive modeler from SAS. His current areas of interest are fair and explainable machine learning.

 

 

 

Oleg Okun is a machine learning expert and an author/editor of four books and numerous journal articles and conference papers. During his more than 25+ years in work, he has been employed in both academia and industry, in his mother country, Belarus, and abroad (Finland, Sweden, and Germany). His work experience includes document image analysis, fingerprint biometrics, bioinformatics, online/offline marketing analytics, and credit scoring analytics. He is interested in all aspects of distributed machine learning and the Internet of Things. He currently lives and works in Hamburg, Germany, and is about to start a new job as a chief architect of intelligent systems. His favorite programming languages are Python, R, and Scala.

 

 

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Table of Contents

Title Page

Copyright and Credits

Hands-On Deep Learning with R

Dedication

About Packt

Why subscribe?

Contributors

About the authors

About the reviewers

Packt is searching for authors like you

Preface

Who this book is for

What this book covers

To get the most out of this book

Download the example code files

Download the color images

Conventions used

Get in touch

Reviews

Section 1: Deep Learning Basics

Machine Learning Basics

An overview of machine learning

Preparing data for modeling

Handling missing values

Training a model on prepared data

Train and test data

Choosing an algorithm

Evaluating model results

Machine learning metrics

Improving model results

Reviewing different algorithms

Summary

Setting Up R for Deep Learning

Technical requirements

Installing the packages

Installing ReinforcementLearning

Installing RBM

Installing Keras

Installing H2O

Installing MXNet

Preparing a sample dataset

Exploring Keras

Available functions

A Keras example

Exploring MXNet

Available functions

Getting started with MXNet

Exploring H2O

Available functions

An H2O example

Exploring ReinforcementLearning and RBM

Reinforcement learning example

An RBM example

Comparing the deep learning libraries

Summary

Artificial Neural Networks

Technical requirements

Contrasting deep learning with machine learning

Comparing neural networks and the human brain

Utilizing bias and activation functions within hidden layers

Surveying activation functions

Exploring the sigmoid function

Investigating the hyperbolic tangent function

Plotting the rectified linear units activation function

Calculating the Leaky ReLU activation function

Defining the swish activation function

Predicting class likelihood with softmax

Creating a feedforward network

Writing a neural network with Base R

Creating a model with Wisconsin cancer data

Augmenting our neural network with backpropagation

Summary

Section 2: Deep Learning Applications

CNNs for Image Recognition

Technical requirements

Image recognition with shallow nets

Image recognition with convolutional neural networks

Optimizers

Loss functions

Evaluation metrics

Enhancing the model with additional layers

Choosing the most appropriate activation function

Selecting optimal epochs using dropout and early stopping

Summary

Multilayer Perceptron for Signal Detection

Technical requirements

Understanding multilayer perceptrons

Preparing and preprocessing data

Deciding on the hidden layers and neurons

Training and evaluating the model

Summary

Neural Collaborative Filtering Using Embeddings

Technical requirements

Introducing recommender systems

Collaborative filtering with neural networks

Exploring embeddings

Preparing, preprocessing, and exploring data

Performing exploratory data analysis

Creating user and item embeddings

Building and training a neural recommender system

Evaluating results and tuning hyperparameters

Hyperparameter tuning

Adding dropout layers 

Adjusting for user-item bias

Summary

Deep Learning for Natural Language Processing

Formatting data using tokenization

Cleaning text to remove noise

Applying word embeddings to increase usable data

Clustering data into topic groups

Summarizing documents using model results

Creating an RBM

Defining the Gibbs sampling rate

Speeding up sampling with contrastive divergence

Computing free energy for model evaluation

Stacking RBMs to create a deep belief network

Summary

Long Short-Term Memory Networks for Stock Forecasting

Technical requirements

Understanding common methods for stock market prediction

Preparing and preprocessing data

Configuring a data generator

Training and evaluating the model

Tuning hyperparameters to improve performance

Summary

Generative Adversarial Networks for Faces

Technical requirements

An overview of GANs

Defining the generator model

Defining the discriminator model

Preparing and preprocessing a dataset

Loading the libraries and data files

Resizing our images

Merging arrays

Training and evaluating the model

Defining the GAN model

Passing data to the GAN model

Training the GAN model

Generating random images

Selecting real images

Combining real and fake images

Creating target labels

Passing input to the discriminator model

Updating the row selector

Evaluating the model

Summary

Section 3: Reinforcement Learning

Reinforcement Learning for Gaming

Technical requirements

Understanding the concept of reinforcement learning

Preparing and processing data

Configuring the reinforcement agent

Tuning hyperparameters

Summary

Deep Q-Learning for Maze Solving

Technical requirements

Creating an environment for reinforcement learning

Defining an agent to perform actions

Building a deep Q-learning model 

Running the experiment

Improving performance with policy functions

Summary

Other Books You May Enjoy

Leave a review - let other readers know what you think

Preface

Deep learning enables efficient and accurate learning from massive amounts of data. Deep learning is being adopted by numerous industries at an increasing pace since it can help solve a number of challenges that cannot easily be solved by means of traditional machine learning techniques. 

Developers working with R will be able to put their knowledge to work with this practical guide to deep learning. This book provides a hands-on approach to implementation and associated methodologies that will have you up and running and productive in no time. Complete with step-by-step explanations of essential concepts and practical examples, you will begin by exploring deep learning in general, including an overview of deep learning advantages and architecture. You will explore the architecture of various deep learning algorithms and understand their applicable fields. You will also learn how to build deep learning models, optimize hyperparameters, and evaluate model performance. 

By the end of this book, you will be able to build and deploy your own deep learning models and applications using deep learning frameworks and algorithms specific to your problem. 

Who this book is for

The target audience of this book is data analysts, machine learning engineers, and data scientists who are familiar with machine learning and want to consolidate their knowledge of deep learning or make their machine learning applications more efficient using R. We assume that the reader has a programming background with at least some common machine learning techniques and previous experience or familiarity with R.

What this book covers

Chapter 1, Machine Learning Basics, reviews all the essential elements of machine learning. This quick refresher is important as we move into deep learning, a subset of machine learning, which shares a number of common terms and methods.

Chapter 2, Setting Up R for Deep Learning, summarizes the common frameworks and algorithms for deep learning and reinforced deep learning in R. You will become familiar with the common libraries, including MXNet, H2O, and Keras, and learn how to install each library in R.

Chapter 3, Artificial Neural Networks, teaches you about artificial neural networks, which make up the base building block for all deep learning. You will build a simple artificial neural network and learn how all of its components combine to solve complex problems.

Chapter 4, CNNs for Image Recognition, demonstrates how to use convolutional neural networks for image recognition. We will briefly cover why these deep learning networks are superior to shallow nets. The remainder of the chapter will cover the components of a convolutional neural network with considerations for making the most appropriate choice.

Chapter 5, Multilayer Perceptron Neural Networks for Signal Detection, shows how to build a multilayer perceptron neural network for signal detection. You will learn the architecture of multilayer perceptron neural networks, and also learn how to prepare data, define hidden layers and neurons, and train a model using a backpropagation algorithm in R.

Chapter 6, Neural Collaborative Filtering Using Embeddings, explains how to build a neural collaborative filtering recommender system using layered embeddings. You will learn how to use the custom Keras API, construct an architecture with user-item embedding layers, and train a practical recommender system using implicit ratings. 

Chapter 7, Deep Learning for Natural Language Processing, explains how to create document summaries. The chapter begins with removing parts of documents that should not be considered and tokenizing the remaining text. Afterward, embeddings are applied and clusters are created. These clusters are then used to make document summaries. We will also learn to code a Restricted Boltzmann Machine (RBM) along with defining Gibbs Sampling, Contrastive Divergence, and Free Energy for the algorithm. The chapter will conclude with compiling multiple RBMs to create a deep belief network.

Chapter 8, Long Short-Term Memory Networks for Stock Forecasting, shows how to use long short-term memory (LSTM) RNN networks for predictive analytics. You will learn how to prepare sequence data for LSTM and how to build a predictive model with LSTM.

Chapter 9, Generative Adversarial Networks for Faces, describes the main components and applications of generative adversarial networks (GANs). You will learn the common applications of generative adversarial networks and how to build a face generation model with GANs.

Chapter 10, Reinforcement Learning for Gaming, demonstrates the reinforcement learning method on a tic-tac-toe game. You will learn the concept and implementation of reinforcement learning in a highly customizable framework. Moreover, you will also learn how to create an agent that plays the best action for each game step and how to implement reinforcement learning in R.

Chapter 11, Deep Q-Learning for Maze Solving, shows us how to use R to implement reinforcement learning techniques within a maze environment. In particular, we will create an agent to solve a maze by training an agent to perform actions and to learn from failed attempts.

To get the most out of this book

We assume you are comfortable and have a working familiarity with downloading and installing software on your computer, including R and additional R library packages from CRAN or GitHub. We also assume some baseline familiarity with independently troubleshooting and resolving packaging dependencies (as needed) based on R Studio console output. You will need a version of R and R Studio installed on your computer—the latest version, if possible.

All code examples have been tested using R version 3.6.3 on macOS X 10.11 (El Capitan) and higher. This code should work with future version releases, too, although this may require some of the deep learning R software packages listed in Chapter 2, Setting Up R for Deep Learning, to be updated.

Hardware/software covered in the book

OS requirements

64-bit for Intel Mac

macOS X 10.11 (El Capitan) and higher

R version 3.6.3 

macOS X 10.11 (El Capitan) and higher

R Studio Desktop 1.2.5033 (Orange Blossom 330255dd)

R version 3.0.1+

 

Once you have installed R (https://www.r-project.org) and R Studio Desktop (https://rstudio.com/products/rstudio/download/) on your computer, you should be ready to install the additional deep learning software packages outlined in Chapter 2, Setting Up R for Deep Learning.

If you are using the digital version of this book, we advise you to type the code yourself or access the code via the GitHub repository (link available in the next section). Doing so will help you avoid any potential errors related to the copying and pasting of code.

Download the example code files

You can download the example code files for this book from your account at www.packt.com. If you purchased this book elsewhere, you can visit www.packtpub.com/support and register to have the files emailed directly to you.

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The code bundle for the book is also hosted on GitHub at https://github.com/PacktPublishing/Hands-on-Deep-Learning-with-R. In case there's an update to the code, it will be updated on the existing GitHub repository.

We also have other code bundles from our rich catalog of books and videos available at https://github.com/PacktPublishing/. Check them out!

Download the color images

We also provide a PDF file that has color images of the screenshots/diagrams used in this book. You can download it here: https://static.packt-cdn.com/downloads/9781788996839_ColorImages.pdf

Get in touch

Feedback from our readers is always welcome.

General feedback: If you have questions about any aspect of this book, mention the book title in the subject of your message and email us at [email protected].

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Section 1: Deep Learning Basics

This section provides a brief overview of deep learning as it relates to machine learning. In this section of the book, you will learn how to get set up to do deep learning in R and build your first neural network, which is the building block of all the deep learning to follow.

This section comprises the following chapters:

Chapter 1

,

Machine Learning Basics

Chapter 2

,

Setting Up R for Deep Learning

Chapter 3

,

Artificial Neural Networks

Machine Learning Basics

Welcome to Hands-On Deep Learning with R! This book will take you through all of the steps that are necessary to code deep learning models using the R statistical programming language. It begins with simple examples as the first step for those just getting started, along with a review of the foundational elements of deep learning for those with more experience. As you progress through this book, you will learn how to code increasingly complex deep learning solutions for a wide variety of tasks. However, regardless of the complexity, each chapter will carefully detail each step. This is so that all topics and concepts can be fully comprehended and the reason for every line of code is completely explained.

In this chapter, we will go through a quick overview of the machine learning process as it will form a base for the subsequent chapters of this book. We will look at processing a dataset to review techniques such as handling outliers and missing values. We will learn how to model data to brush up on the process of predicting an outcomeand evaluating the results, and we will also review the most suitable metrics for various problems.We will look at improving a model using parameter tuning, feature engineering, and ensembling, and we will learn when to use different machine learning algorithms based on the task to solve.

This chapter will cover the following topics:

An overview of machine learning

Preparing data for modeling

Training a model on prepared data

Evaluating model results

Improving model results

Reviewing different algorithms

An overview of machine learning

All deep learning is machine learning, but not all machine learning is deep learning. Throughout this book, we will focus on processes and techniques that are specific to deep learning in R. However, all the core principles of machine learning are essential to understand before we can move on to explore deep learning.

Deep learning is marked as a special subset of machine learning based on the use of neural networks that mimic brain activity behavior. The learning is referred to as being deep because, during the modeling process, the data is manipulated by a number of hidden layers. In this type of modeling, specific information is gathered from each layer. For example, one layer may find the edges of images while another finds particular hues.

Notable applications for this type of machine learning include the following:

Image recognition (including facial recognition)

Signal detection

Recommendation systems

Document summarization

Topic modeling

Forecasting

Solving games

Moving an object through space, for example, self-driving cars

All of these topics will be covered throughout the course of this book. All of these topics implement deep learning and neural networks, which are primarily used for classification and regression.