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Cyrus Dasadia

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Beschreibung

Manage, fine-tune, secure and deploy your MongoDB solution with ease with the help of practical recipes

About This Book

  • Configure and deploy your MongoDB instance securely, without any hassle
  • Optimize your database's query performance, perform scale-out operations, and make your database highly available
  • Practical guide with a recipe-based approach to help you tackle any problem in the application and database administration aspects of MongoDB

Who This Book Is For

Database administrators with a basic understanding of the features of MongoDB and who want to professionally configure, deploy, and administer a MongoDB database, will find this book essential. If you are a MongoDB developer and want to get into MongoDB administration, this book will also help you.

What You Will Learn

  • Install and deploy MongoDB in production
  • Manage and implement optimal indexes
  • Optimize monitoring in MongoDB
  • Fine-tune the performance of your queries
  • Debug and diagnose your database's performance
  • Optimize database backups and recovery and ensure high availability
  • Make your MongoDB instance scalable
  • Implement security and user authentication features in MongoDB
  • Master optimal cloud deployment strategies

In Detail

MongoDB is a high-performance and feature-rich NoSQL database that forms the backbone of the systems that power many different organizations. Packed with many features that have become essential for many different types of software professional and incredibly easy to use, this cookbook contains more than 100 recipes to address the everyday challenges of working with MongoDB.

Starting with database configuration, you will understand the indexing aspects of MongoDB. The book also includes practical recipes on how you can optimize your database query performance, perform diagnostics, and query debugging. You will also learn how to implement the core administration tasks required for high-availability and scalability, achieved through replica sets and sharding, respectively. You will also implement server security concepts such as authentication, user management, role-based access models, and TLS configuration. You will also learn how to back up and recover your database efficiently and monitor server performance.

By the end of this book, you will have all the information you need—along with tips, tricks, and best practices—to implement a high-performance MongoDB solution.

Style and approach

This practical book follows a problem-solution approach to help you tackle any issues encountered while performing MongoDB administrative tasks. Each recipe is detailed, and explained in a very easy to understand manner

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Veröffentlichungsjahr: 2017

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MongoDB Administrator's Guide

 

 

 

 

 

 

 

 

 

 

Over 100 practical recipes to efficiently maintain and administer your MongoDB solution

 

 

 

 

 

 

 

 

 

 

Cyrus Dasadia

 

 

BIRMINGHAM - MUMBAI

MongoDB Administrator's Guide

Copyright © 2017 Packt Publishing

 

All rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, without the prior written permission of the publisher, except in the case of brief quotations embedded in critical articles or reviews.

Every effort has been made in the preparation of this book to ensure the accuracy of the information presented. However, the information contained in this book is sold without warranty, either express or implied. Neither the author, nor Packt Publishing, and its dealers and distributors will be held liable for any damages caused or alleged to be caused directly or indirectly by this book.

Packt Publishing has endeavored to provide trademark information about all of the companies and products mentioned in this book by the appropriate use of capitals. However, Packt Publishing cannot guarantee the accuracy of this information.

 

First published: October 2017

 

Production reference: 1241017

Published by Packt Publishing Ltd.
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ISBN 978-1-78712-648-0

 

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Credits

Author

 

Cyrus Dasadia

Copy Editor

 

Safis Editing

Reviewers

 

Nilap Shah 

Ruben Oliva Ramos

Project Coordinator

 

Nidhi Joshi

Commissioning Editor

 

Amey Varangaonkar

Proofreader

 

Safis Editing

Acquisition Editor

 

Viraj Madhav

Indexer

 

Aishwarya Gangawane

Content Development Editor

 

Cheryl Dsa

Graphics

 

Tania Dutta

Technical Editor

 

Dinesh Pawar

Production Coordinator

 

Shantanu Zagade

About the Author

Cyrus Dasadia has enjoyed tinkering with open source projects since 1996. He has been working as a Linux system administrator and part-time programmer for over a decade. He works at InMobi, where he loves designing tools and platforms. His love for MongoDB blossomed in 2013, when he was amazed by its ease of use and stability. Since then, almost all of his projects have been written with MongoDB as the primary backend. Cyrus is also the creator of an open source alert management system called CitoEngine. His spare time is devoted to trying to reverse-engineer software, playing computer games, or increasing his silliness quotient by watching reruns of Monty Python.

About the Reviewers

Nilap Shah is a lead software consultant with experience across various fields and technologies. He is expert in .NET, Uipath (Robotics) and MongoDB. He is certified MongoDB developer and DBA. He is technical writer as well as technical speaker. He is also providing MongoDB corporate training. Currently, he is working as lead MongoDB consultant and providing solutions with MongoDB technology (DBA and developer projects). His LinkedIn profile can be found at https://www.linkedin.com/in/nilap-shah-8b6780a/ and can be reachable +91-9537047334 on WhatsApp.

Ruben Oliva Ramos is a computer systems engineer from Tecnologico de Leon Institute, with a master's degree in computer and electronic systems engineering, teleinformatics, and networking specialization from the University of Salle Bajio in Leon, Guanajuato, Mexico. He has more than 5 years of experience in developing web applications to control and monitor devices connected with Arduino and Raspberry Pi using web frameworks and cloud services to build the Internet of Things applications.

He is a mechatronics teacher at the University of Salle Bajio and teaches students of the master's degree in design and engineering of mechatronics systems. Ruben also works at Centro de Bachillerato Tecnologico Industrial 225 in Leon, Guanajuato, Mexico, teaching subjects such as electronics, robotics and control, automation, and microcontrollers at Mechatronics Technician Career; he is a consultant and developer for projects in areas such as monitoring systems and datalogger data using technologies (such as Android, iOS, Windows Phone, HTML5, PHP, CSS, Ajax, JavaScript, Angular, and ASP.NET), databases (such as SQlite, MongoDB, and MySQL), web servers (such as Node.js and IIS), hardware programming (such as Arduino, Raspberry pi, Ethernet Shield, GPS, and GSM/GPRS, ESP8266), and control and monitor systems for data acquisition and programming.

He has authored the book Internet of Things Programming with JavaScript and Advanced Analytics with R and Tableau by Packt Publishing. He is also involved in monitoring, controlling, and the acquisition of data with Arduino and Visual Basic .NET for Alfaomega.

I would like to thank my savior and lord, Jesus Christ, for giving me the strength and courage to pursue this project; my dearest wife, Mayte; our two lovely sons, Ruben and Dario; my dear father, Ruben; my dearest mom, Rosalia; my brother, Juan Tomas; and my sister, Rosalia, whom I love, for all their support while reviewing this book, for allowing me to pursue my dream, and tolerating not being with them after my busy day job. I'm very grateful to Pack Publishing for giving the opportunity to collaborate as an author and reviewer, to belong to this honest and professional team.

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Table of Contents

Preface

What this book covers

What you need for this book

Who this book is for

Sections

Getting ready

How to do it…

How it works…

There's more…

See also

Conventions

Reader feedback

Customer support

Downloading the example code

Errata

Piracy

Questions

Installation and Configuration

Introduction

Installing and starting MongoDB on Linux

Getting ready

How to do it…

How it works…

There's more…

Installing and starting MongoDB on macOS

Getting ready

How to do it...

How it works…

Binding MongoDB process to a specific network interface and port

Getting ready

How to do it...

How it works...

Enabling SSL for MongodDB

Getting ready

How to do it..

How it works...

There's more…

Choosing the right MongoDB storage engine

WiredTiger

MMAPv1

The verdict

Changing storage engine

Getting ready

How to do it...

How it works...

Separating directories per database

Getting ready

How to do it...

How it works...

Customizing the MongoDB configuration file

Getting ready

How to do it..

How it works...

There's more...

Running MongoDB as a Docker container

Getting ready

How to do it...

How it works...

There's more..

Understanding and Managing Indexes

Introduction

Creating an index

Getting ready

How it works...

There's more...

Managing existing indexes

Getting ready

How to do it...

How it works...

How to use compound indexes

Getting ready

How to do it...

How it works…

There's more...

Creating background indexes

Getting ready

How to do it...

How it works...

Creating TTL-based indexes

Getting ready

How to do it...

How it works...

There's more...

Creating a sparse index

Getting ready

How to do it...

How it works...

Creating a partial index

Getting ready

How to do it...

How it works...

Creating a unique index

Getting ready

How to do it...

How it works...

Performance Tuning

Introduction

Configuring disks for better I/O

Reading and writing from disks

Few considerations while selecting storage devices

Measuring disk I/O performance with mongoperf

Getting ready

How to do it...

How it works...

Finding slow running queries and operations

Getting ready

How to do it...

How it works...

There's more...

Storage considerations when using Amazon EC2

Figuring out the size of a working set

There's more...

High Availability with Replication

Introduction

Initializing a new replica set

Getting ready

How to do it...

How it works...

Adding a node to the replica set

Getting ready

How to do it...

How it works...

Removing a node from the replica set

Getting ready

How to do it...

How it works...

Working with an arbiter

Getting ready

How to do it...

How it works...

Switching between primary and secondary nodes

Getting ready

How to do it...

How it works...

Changing replica set configuration

Getting ready

How to do it...

How it works..

Changing priority to replica set nodes

Getting ready

How to do it...

How it works...

There's more...

High Scalability with Sharding

Understanding sharding and its components

Components of MongoDB sharding infrastructure

Config server

The mongos query router

The shard server

Choosing the shard key

Setting up and configuring a sharded cluster

Getting ready

How to do it...

How it works...

Managing chunks

Getting ready

How to do it...

How it works...

Moving non-sharded collection data from one shard to another

Getting ready

How to do it...

How it works...

Removing a shard from the cluster

Getting ready

How to do it...

How it works...

Understanding tag aware sharding – zones

Getting ready

How to do it...

How it works...

See also

Managing MongoDB Backups

Introduction

Taking backup using mongodump tool

Getting ready

How to do it...

How it works...

There's more...

Taking backup of a specific mongodb database or collection

Getting ready

How to do it...

How it works...

Taking backup of a small subset of documents in a collection

Getting ready

How to do it...

How it works...

Using bsondump tool to view mongodump output in human readable form

Getting ready

How to do it...

How it works...

Creating a point in time backup of replica sets

Getting ready

How to do it...

How it works...

Using the mongoexport tool

Getting ready

How to do it...

How it works...

Creating a backup of a sharded cluster

Getting ready

How to do it...

How it works...

Restoring MongoDB from Backups

Introduction

Restoring standalone MongoDB using the mongorestore tool

Getting ready

How to do it...

How it works...

Restoring specific database or specific collection

Getting ready

How to do it...

How it works...

Restoring data from one collection or database to another

Getting ready

How to do it...

How it works...

Creating a new MongoDB replica set node using backups

Getting ready

How to do it...

How it works...

Restoring a MongoDB sharded cluster from backup

Getting ready

How to do it...

How it works...

Monitoring MongoDB

Introduction

Monitoring MongoDB performance with mongostat

Getting ready

How to do it...

How it works...

See also

Checking replication lag of nodes in a replica set

Getting ready

How to do it...

How it works...

Monitoring and killing long running operations on MongoDB

Getting ready

How to do it...

How it works...

See also

Checking disk I/O usage

Getting ready

How to do it...

How it works...

Collecting MongoDB metrics using Diamond and Graphite

Getting ready

How to do it...

How it works...

See also

Authentication and Security in MongoDB

Introduction

Setting up authentication in MongoDB and creating a superuser account

Getting ready

How to do it...

How it works...

Creating normal users and assigning built-in roles

Getting ready

How to do it...

How it works...

See also...

Creating and assigning custom roles

Getting ready

How to do it...

How it works...

Restoring access if you are locked out

Getting ready

How to do it...

How it works...

Using key files to authenticate servers in a replica set

Getting ready

How to do it...

How it works...

There's more...

Deploying MongoDB in Production

Introduction

Configuring MongoDB for a production deployment

Getting ready

How to do it...

Upgrading production MongoDB to a newer version

Getting ready

How to do it...

There's more...

Setting up and configuring TLS (SSL)

Getting ready

How to do it...

How it works...

There's more...

Restricting network access using firewalls

Getting ready

How to do it...

How it works...

See also

Preface

MongoDB is an extremely versatile NoSQL database that offers performance, scalability, and reliability of data. It has slowly become one of the leading NoSQL database systems used for storing extremely large datasets. In addition to this, the fact that it is open source makes it the perfect candidate for any project. From prototyping a minimal viable product to storing millions of complex documents, MongoDB is clearly emerging as the go-to database system.

This book aims to help the reader in operating and managing MongoDB systems. The contents of this book are divided into sections covering all the core aspects of administering MongoDB systems. The primary goal of this book is not to duplicate the MongoDB documentation, but to gently nudge the reader towards topics that are often overlooked when designing MongoDB systems.

What this book covers

Chapter 1, Installation and Configuration, covers the basic details of how to install MongoDB, either from the bundled binaries or through the operating system's package managers. It also covers configuration details, as well as how to install MongoDB in a Docker container.

Chapter 2, Understanding and Managing Indexes, gives a quick overview of the benefits of indexes, their various types, and how to optimize database responses by choosing the correct indexes.

Chapter 3, Performance Tuning, covers various topics that can help optimize the infrastructure to deliver optimal database performance. We discuss disk I/O optimization, measuring slow queries, storage considerations in AWS, and managing working sets.

Chapter 4, High Availability with Replication, shows how to achieve high availability using MongoDB replica sets. Topics such as the configuration of replica sets, managing node subscriptions, arbiters, and so on are covered.

Chapter 5, High Scalability with Sharding, covers MongoDB's high scalability aspects using shards. The topics covered in this section include setting up a sharded cluster, managing chunks, managing non-sharded data, adding and removing nodes from the cluster, and creating a geographically distributed sharded cluster.

Chapter 6, Managing MongoDB Backups, helps the reader understand how to select an optimum backup strategy for their MongoDB setup. It covers how to take backups of standalone systems, replica sets, analyzing backup files, and so on.

Chapter 7, Restoring MongoDB from Backups, shows various techniques for restoring systems from previously generated backups. Topics covered include restoring standalone systems, specific databases, the backup of one database to another database, replica sets, and sharded clusters.

Chapter 8, Monitoring MongoDB, illustrates various aspects of monitoring the health of a MongoDB setup. This chapter includes recipes for using mongostat, monitoring replica set nodes, monitoring long-running operations, checking disk I/O, fetching database metrics, and storing them in a time-series database such as Graphite.

Chapter 9, Authentication and Security in MongoDB, looks into various aspects involved in securing a MongoDB infrastructure. Topics covered in this chapter include creating and managing users, implementing role-based access models, implementing SSL/TLS-based transport mechanisms, and so on.

Chapter 10, Deploying MongoDB in Production, provides insights into deploying MongoDB in a production environment, upgrading servers to newer versions, using configuration management tools to deploy MongoDB, and using Docker Swarm to set up MongoDB in containers.

What you need for this book

For the most part, this book requires only MongoDB 3.4 or higher. Although most of the operating system commands used throughout the book are for Linux, the semantics is generic and can be replayed on any operating system. It may be useful to have some knowledge of how MongoDB works, but for the most part, all chapters are verbose enough for beginners as well.

Who this book is for

This book is for database administrators or site reliability engineers who are keen on ensuring the stability and scalability of their MongoDB systems. Database administrators who have a basic understanding of the features of MongoDB and want to professionally configure, deploy, and administer a MongoDB database will find this book essential. If you are a MongoDB developer and want to get into MongoDB administration, this book will also help you.

Sections

In this book, you will find several headings that appear frequently (Getting ready, How to do it…, How it works…, There's more…, and See also). To give clear instructions on how to complete a recipe, we use these sections as follows.

Getting ready

This section tells you what to expect in the recipe, and describes how to set up any software or any preliminary settings required for the recipe.

How to do it…

This section contains the steps required to follow the recipe.

How it works…

This section usually consists of a detailed explanation of what happened in the previous section.

There's more…

This section consists of additional information about the recipe in order to make the reader more knowledgeable about the recipe.

See also

This section provides helpful links to other useful information for the recipe.

Conventions

In this book, you will find a number of text styles that distinguish between different kinds of information. Here are some examples of these styles and an explanation of their meaning. Code words in text, database table names, folder names, filenames, file extensions, pathnames, dummy URLs, user input, and Twitter handles are shown as follows: "You can view the available command line parameters by using --help or -h."

Any command-line input or output is written as follows:

ln -s data/mongodb-linux-x86_64-ubuntu1404-3.4.4/ data/mongodb

New terms and important words are shown in bold.

Warnings or important notes appear like this.
Tips and tricks appear like this.

Reader feedback

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Downloading the example code

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Errata

Although we have taken every care to ensure the accuracy of our content, mistakes do happen. If you find a mistake in one of our books-maybe a mistake in the text or the code-we would be grateful if you could report this to us. By doing so, you can save other readers from frustration and help us improve subsequent versions of this book. If you find any errata, please report them by visiting http://www.packtpub.com/submit-errata, selecting your book, clicking on the Errata Submission Form link, and entering the details of your errata. Once your errata are verified, your submission will be accepted and the errata will be uploaded to our website or added to any list of existing errata under the Errata section of that title. To view the previously submitted errata, go to https://www.packtpub.com/books/content/support and enter the name of the book in the search field. The required information will appear under the Errata section.

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Questions

If you have a problem with any aspect of this book, you can contact us at [email protected], and we will do our best to address the problem.

Installation and Configuration

In this chapter, we will cover the following recipes:

Installing and starting MongoDB on Linux

Installing and starting MongoDB on macOS

Binding MongoDB process to a specific network interface and port

Enabling SSL for MongoDB

Choosing the right MongoDB storage engine

Changing storage engine

Separating directories per database

Customizing the MongoDB configuration file

Running MongoDB as a Docker container

Introduction

In this chapter, we will look at how to install a standalone MongoDB server. We will also look at how to perform some useful customization to the default configuration of a MongoDB server. Lastly, we will run a MongoDB server inside a Docker container.

MongoDB 3.4 was the latest stable release available while writing this book. All recipes in this and the subsequent chapters assume you are using MongoDB 3.4 or higher.

Installing and starting MongoDB on Linux

Getting ready

You will need a machine running Ubuntu 14.04 or higher, although in theory any Red Hat or Debian-based Linux distribution should be fine. You will also need to download the latest stable binary tarball from https://www.mongodb.com/download-center

How to do it…

Create a directory

/data

and untar your downloaded file into this directory so that you now have a

/data/mongodb-linux-x86_64-ubuntu1404-3.4.4

directory. All of MongoDB's core binaries are available in the

/data/mongodb-linux-x86_64-ubuntu1404-3.4.4/bin

directory.

Create a symbolic link to the versioned file directory for a simpler naming convention and also allowing us to use a generic directory name (for example, in scripts):

ln -s /data/mongodb-linux-x86_64-ubuntu1404-3.4.4/ /data/mongodb

Create a directory for the database:

mkdir /data/db

Start the MongoDB server:

/data/mongodb/bin/mongod --dbpath /data/db

You should see output like this:

2017-05-14T10:07:15.247+0000 I CONTROL [initandlisten] MongoDB starting : pid=3298 port=27017 dbpath=/data/db 64-bit host=vagrant-ubuntu-trusty-64

2017-05-14T10:07:15.247+0000 I CONTROL [initandlisten] db version v3.4.4

2017-05-14T10:07:15.248+0000 I CONTROL [initandlisten] git version: 888390515874a9debd1b6c5d36559ca86b44babd

2017-05-14T10:07:15.248+0000 I CONTROL [initandlisten] OpenSSL version: OpenSSL 1.0.1f 6 Jan 2014

2017-05-14T10:07:15.248+0000 I CONTROL [initandlisten] allocator: tcmalloc

2017-05-14T10:07:15.249+0000 I CONTROL [initandlisten] modules: none

2017-05-14T10:07:15.249+0000 I CONTROL [initandlisten] build environment:

2017-05-14T10:07:15.249+0000 I CONTROL [initandlisten] distmod: ubuntu1404

2017-05-14T10:07:15.249+0000 I CONTROL [initandlisten] distarch: x86_64

2017-05-14T10:07:15.250+0000 I CONTROL [initandlisten] target_arch: x86_64

2017-05-14T10:07:15.250+0000 I CONTROL [initandlisten] options: { storage: { dbPath: "/data/db" } }

< -- snip -- >

2017-05-14T10:07:15.313+0000 I COMMAND [initandlisten] setting featureCompatibilityVersion to 3.4

2017-05-14T10:07:15.313+0000 I NETWORK [thread1] waiting for connections on port 27017

You can stop the server by pressing

Ctrl

+

C

.

Additionally, for convenience, we can edit the system's PATH variable to include the mongodb binaries directory. This allows us to invoke the mongodb binaries without having to type the entire path. For example, to execute the mongo client, instead of having to type /data/mongodb/bin/mongo every time, we can simply type mongo. This can be done by appending your ~/.bashrc or ~/.zshrc files for bash and zsh respectively, with the following lines:

PATH=/data/mongodb/bin:${PATH}

export PATH