Greene's Protective Groups in Organic Synthesis - Peter G. M. Wuts - E-Book

Greene's Protective Groups in Organic Synthesis E-Book

Peter G. M. Wuts

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Integral, reliable, and comprehensive guidance for chemists performing the complex syntheses required for the formation and cleavage of protective groups

Organic synthesis is the preparation and creation of organic compounds for use in natural products, pharmaceuticals, and other molecules. The synthesis of molecules having multiple functional groups often requires the use of ‘protective groups’ to achieve site selectivity in a chemical reaction within a molecule bearing multiple sites of reactivity. Protective groups are installed temporarily to prevent unwanted reactions at a particular site, while transforming a different functional group. Once they have served their function, they are removed to expose the original group. Without a thorough understanding of the methods required to install and remove them, the design of a synthesis of a molecule having multiple functional groups in most cases is effectively impossible.

Greene’s Protective Groups in Organic Synthesis, 6th Edition is the definitive compilation of protective groups, their classification, and their application in a wide array of situations. With a long tradition of comprehensive coverage, organized on the basis of the functional group in need of protection and subsequent deprotection, it is an essential reference and resource for all chemists involved in organic syntheses. Now fully updated to reflect the current state of the art, it remains an indispensable resource for generating life-changing organic products. This edition contains a new chapter on how protective groups effect reactivity and selectivity in carbohydrate chemistry.

Readers of the sixth edition of Greene’s Protective Groups in Organic Synthesis will also find:

  • Methodology for planning selectivity in organic syntheses
  • Detailed discussion of all major functional groups including ethers, amides, and phenols
  • A discussion of the impact of protective groups on reactivity in carbohydrates

Greene’s Protective Groups in Organic Synthesis is ideal for synthetic organic chemists or medicinal chemists in academia, industry — pharmaceuticals, food, agrochemicals, and biotech — or government agencies.

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Table of Contents

COVER

TABLE OF CONTENTS

VOLUME 1

TITLE PAGE

COPYRIGHT PAGE

DEDICATION

PREFACE

ABBREVIATIONS

PROTECTIVE GROUPS

ABBREVIATIONS REAGENTS

1 THE ROLE OF PROTECTIVE GROUPS IN ORGANIC SYNTHESIS

PROPERTIES OF A PROTECTIVE GROUP

HISTORICAL DEVELOPMENT

DEVELOPMENT OF NEW PROTECTIVE GROUPS

SELECTION OF A PROTECTIVE GROUP FROM THIS BOOK

SYNTHESIS OF COMPLEX SUBSTANCES. TWO EXAMPLES (AS USED IN THE SYNTHESIS OF HIMASTATIN AND PALYTOXIN) OF THE SELECTION, INTRODUCTION, AND REMOVAL OF PROTECTIVE GROUPS

2 PROTECTION FOR THE HYDROXYL GROUP INCLUDING 1,2- AND 1,3-DIOLS

ETHERS

ESTERS

PROTECTION FOR 1,2- AND 1,3-DIOLS

3 PROTECTION FOR PHENOLS AND CATECHOLS

PROTECTION FOR PHENOLS AND CATECHOLS

PROTECTION FOR CATECHOLS (1,2-DIHYDROXYBENZENES)

PROTECTION FOR 2-HYDROXYBENZENETHIOLS

4 PROTECTION FOR THE CARBONYL GROUP

ACETALS AND KETALS

MISCELLANEOUS DERIVATIVES

PROTECTION OF THE CARBONYL GROUP AS AN ENOLATE ANIONS, ENOL ETHERS, ENAMINES, AND IMINES

MONOPROTECTION OF DICARBONYL COMPOUNDS

5 PROTECTION FOR THE CARBOXYL GROUP

ESTERS

AMIDES AND HYDRAZIDES

PROTECTION OF SULFONIC ACIDS

PROTECTION OF BORONIC ACIDS

6 PROTECTION FOR THE THIOL GROUP

THIOETHERS

THIOESTERS

MISCELLANEOUS DERIVATIVES

VOLUME 2

TITLE PAGE

COPYRIGHT PAGE

DEDICATION

PREFACE

ABBREVIATIONS

PROTECTIVE GROUPS

ABBREVIATIONS REAGENTS

7 PROTECTION FOR THE AMINO GROUP

INTRODUCTION TO AMINES

CARBAMATES

AMIDES

SPECIAL –NH PROTECTIVE GROUPS

N

-HETEROATOM DERIVATIVES

PROTECTION OF AMINO ALCOHOLS

PROTECTION FOR IMIDAZOLES, PYRROLES, INDOLES, AND OTHER AROMATIC HETEROCYCLES

PROTECTION FOR THE AMIDE ─NH

PROTECTION FOR THE SULFONAMIDE ─NH

8 PROTECTION FOR THE ALKYNE ─CH

9 PROTECTION FOR THE PHOSPHATE GROUP

INTRODUCTION

SOME GENERAL METHODS FOR PHOSPHATE ESTER FORMATION

REMOVAL OF PROTECTIVE GROUPS FROM PHOSPHORUS

ALKYL PHOSPHATES

PHOSPHATES CLEAVED BY CYCLODEESTERIFICATION

2-SUBSTITUTED ETHYL PHOSPHATES

HALOETHYL PHOSPHATES

BENZYL PHOSPHATES

PHENYL PHOSPHATES

PHOTOCHEMICALLY CLEAVED PHOSPHATE PROTECTIVE GROUPS

AMIDATES

MISCELLANEOUS DERIVATIVES

10 PROTECTING GROUP EFFECTS IN CARBOHYDRATE CHEMISTRY

INTRODUCTION

AGLYCONE TRANSFER

PARTICIPATING GROUPS

CONFORMATIONAL RESTRICTION

SILYL GROUPS: CONFORMATIONAL AND REACTIVITY EFFECT

AMINO SUGAR PROTECTION

INTRODUCTION TO THE FORMATION OF SIALYL GLYCOSIDES

PROTECTING GROUP EFFECTS IN THE GLYCOSYLATION OF 2-DEOXY SUGARS

FURANOSIDES

PROTECTING GROUP EFFECTS ON ACCEPTORS

C

-GLYCOSYLATION

SPHINGOLIPIDS

11 REACTIVITIES, REAGENTS, AND REACTIVITY CHARTS

REACTIVITIES

REAGENTS

REACTIVITY CHARTS

INDEX

END USER LICENSE AGREEMENT

List of Tables

Chapter 2

Table 1 Removal Time in TFA/CH

2

Cl

2

(v/v)

Table 1 Relative Cleavage Rates for Selected Ethers of a Primary Alcohol

Table 2 Relative Cleavage Rates of Various Ethers of a Secondary Alcohol

Table 1 Relative Cleavage Rates for Various Uridine Protected Acetals

Table 1 Cleavage of Substituted Allyl Octyl Ethers Promoted by CeCl

3

·7H

2

O

Table 1 Approximate Half-Life of Various Allylic Ethers in Wet CD

2

Cl

2

at 80°C ...

Table 1 Relative Rates for Substituted Benzyl Ether Cleavage

Table 2 Solvent Effect on the Hydrogenation of Benzyl Ether at 1.1 bar H

2

at 5...

Table 1 Cleavage of MPM, DMPM, and TMPM Ethers with DDQ in CH

2

Cl

2

/H

2

O at 20°C...

Table 1 Relative Reactivity of PSB, Bn, and TBS Ethers

Table 1 Relative Rates of Silyl Ether Cleavage

Table 1 Half-Lives for Hydrolysis of Various Esters

Table 1 Cleavage Rates for 4-Substituted Psec Derivatives

Table 1 Acidic Hydrolysis of 2′,3′-Protected Uridine Derivatives

Chapter 4

Table 1 Relative Hydrolysis Rates of α-Androstane Cyclic Ketals in 0.02

N

HCl ...

Table 1 Olefin Isomerization as a Function of Acid p

K

a

.

Chapter 7

Table 1Time for Complete Deblocking of Substituted Urethanes by Various Amine ...

Table 1 Relative Efficiency of Allyl Group Scavengers with Pd(Ph3P)4 as Cataly ...

Table 1Comparison Between Fmoc and Nsc Protected Peptides

Chapter 10

Table 1Reactivity Based on Leaving Group with I

2

Promoter

Table 2Relative Reactivity of Armed and Superarmed Donors with Different Prom ...

Table 1Effect of Donor-Protecting Group Arrangement on Schmidt Glycosylation ...

Table 2Glycosylation with the ADMB Group at the 2-Position

Table 1Is C4 Participation in Mannose Relevant

Table 2Effect of C4 Esters as SBox Donors

Table 1Effect of 2,3,4-

O

-Substituents on Selectivity

Table 2β-Rhamnosylation with Orthocarbonate Donor from Entry 5 in Table 1 ...

Table 1−ΔG° Values for the Ring Inversion of Cyclohexyl Silyl Ethers ...

Table 2ΔG° Values for Ring Inversion of cis-4-Methylcyclohexyl Silyl Ethers ...

Table 3% Axial Conformer as a Function of Silyl Group in 1,4-Substituted Cycl ...

Table 4% Axial Conformer as a Function of Silyl Group in 1,2-Substituted Cycl ...

Table 1DMTST Activation of Different Amine-Protected Sialyl Donors

Table 2NIS/TfOH Activation of Different Amine-Protected Sialyl Donors

Table 1Effect of Donor-Leaving Group and Acceptor-Protecting Group

Table 2Benzoate Versus Benzyl Effect on O2, O3, and O4 Glycosylations

List of Illustrations

Chapter 1

Scheme 1 Preparation of the pyrroloindoline

Scheme 2 Preparation of pyrroloindoline dimer

Scheme 3 Protecting group manipulations on dimer

Scheme 4 Preparation of the piperazyl piece

Scheme 5 Peptide formation

Scheme 6 Coupling of the units and deprotection

Figure 1 Palytoxin carboxylic acid.

Chapter 9

Scheme 1 Automated synthesis of oligonucleotides. Synthetic cycle for the phos...

Chapter 10

Scheme 1 Initial attempt at Synthesis of Herbicidin

Scheme 2 Synthesis of Herbicidin based on silyl induced conformational flip.

Guide

Cover Page

Title Page

Copyright Page

Dedication

Preface

Abbreviations

Title Page

Copyright Page

Dedication

Preface

Abbreviations

Table of Contents

Begin Reading

Index

WILEY END USER LICENSE AGREEMENT

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GREENE’S PROTECTIVE GROUPS IN ORGANIC SYNTHESIS

Sixth Edition

VOLUME 1

PETER G. M. WUTS

Kalamazoo, Michigan, USA

Copyright © 2025 by John Wiley & Sons, Inc. All rights reserved, including rights for text and data mining and training of artificial intelligence technologies or similar technologies.

Published by John Wiley & Sons, Inc., Hoboken, New Jersey.Published simultaneously in Canada.

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Library of Congress Cataloging-in-Publication Data applied for

Hardback ISBN: 9781394233168 [Set]Hardback ISBN: 9781394319343 [Volume 1]Hardback ISBN: 9781394319350 [Volume 2]ePDF ISBN: 9781394233175ePUB ISBN: 9781394233182oBook ISBN: 9781394233199

Cover Design: WileyCover Images: © Elizabeth Contessa Wuts

DEDICATION

This volume is dedicated to the memory of my loyal assistant Osiris Wuts.

PREFACE

This edition has maintained the tradition of the previous five editions. The literature cutoff was the end of February 2024, which covers nearly 10 years since the last edition. I have processed over 4000 references of which a little over 3000 of these have been put in the new addition. I have been as all-inclusive as possible since this book is meant to provide as many options as possible for protection and deprotection.

Although there are numerous papers with titles like “Protecting group free synthesis of X,” we have a long way to go before protecting groups will not be used in chemical synthesis.

This edition includes a new chapter on how protecting groups affect the glycosylation process, a subject that has interested me since I started working on the second edition. I have limited the chapter to carbohydrates due to the sheer volume of literature that would need to be covered. This new chapter is divided into sections that cover different situations where protecting groups influence reactivity and stereoselectivity. When going through the chapter the reader will find that there is some overlap between sections since the publications cited, often present information in multiple areas. I have included a number of tables illustrating how various protecting group arrangements influence reaction outcomes. Being an organic chemist looking at structures and drawing conclusions is much more instructive than trying to do this in print. I have tried to organize related systems together as much as possible to simplify the examination of a particular concept. For example, how do various conformational restraints influence the outcome of a glycosylation.

In conclusion, I thank Jonathan Rose my editor for giving me this opportunity during my so-called retirement. Again, I thank Jed Fisher, who gave me a copy of his extensive database which included many useful references. I must also thank Western Michigan University for giving me an Adjunct Professorship, allowing me access to their library which has helped me keep up with the literature. My greatest thanks must go to my wife, Lizzie, who has encouraged me to do this edition and who printed out over 3000 references since it is difficult to read papers on the computer. As always, she brings me a glass of wine at the end of my evening session of working on the book.

Peter G. M. Wuts

February 2025

ABBREVIATIONS

PROTECTIVE GROUPS

In some cases, several abbreviations are used for the same protective group. We have listed the abbreviations as used by an author in his original paper, including capital and lower-case letters. Occasionally, the same abbreviation has been used for two different protective groups. This information is also included.

ABO

2,7,8-trioxabicyclo[3.2.1]octyl

Ac

acetyl

ACBZ

4-azidobenzyloxycarbonyl

ACE

O

-bis(2-Acetoxyethoxy)methyl

AcHmb

2-acetoxy-4-methoxybenzyl

Acm

acetamidomethyl

a-CNV-OPh

α-carboxy-6-nitroveratryl

Ad

1-adamantyl

ADMB

4-acetoxy-2,2-dimethylbutanoate

Adoc

1-adamantyloxycarbonyl

Adpoc

1-(1-adamantyl)-1-methylethoxycarbonylAIBNAzobisisobutyronitrile

Alloc or AOC

allyloxycarbonyl

AOC or Alloc

allyloxycarbonyl

Allocam

allyloxycarbonylaminomethyl

Als

allylsulfonyl

AMB

2-(acetoxymethyl)benzoyl

AMPA

(2-azidomethyl)phenylacetate

AN

4-methoxyphenyl or anisyl

Ans

anisylsulfonyl

Anpe

2-(4-acetyl-2-nitrophenyl)ethyl

p

-AOM

p

-anisyloxymethyl or (4-methoxyphenoxy)methyl

APAC

2-allyloxyphenylacetate

Aqmoc

anthraquinone-2-ylmethoxycarbonyl

Azb

p

-azidobenzyl

Azm

azidomethyl

AZMB

2-(azidomethyl)benzoate

Bam

benzamidomethyl

BBA

butane-2,3-bisacetal

Bbc

but-2-ynylbisoxycaronyl

BDIPS

biphenyldiisopropylsilyl

benzoyldiisopropylsilyl

BDMS

biphenyldimethylsilyl

benzyldimethylsilyl

Bdt

1,3-benzodithiolan-2-yl

Betsyl or Bts

benzothiazole-2-sulfonyl

Bhcmoc

6-bromo-7-hydroxycoumarin-4-ylmethoxycarbonyl

BHQ

8-bromo-7-hydroxyquinoline-2-ylmethyl

BHT

2,6-di-

t

-butyl-4-methylphenyl

BIBS

di-

t

-butylisobutylsilyl

Bic

5-benzisoxazolylmethoxycarbonyl

Bim

5-benzisoazolylmethylene

Bimoc

benz[ 

f

 ]inden-3-ylmethoxycarbonyl

BIPSOP

N

-2,5-bis(triisopropylsiloxy)pyrrolyl

Bloc

1-buten-4-yl

BMB

o

-(benzoyloxymethyl)benzoyl

Bmpc

2,4-dimethylthiophenoxycarbonyl

Bmpm

bis(4-methoxyphenyl)-1′-pyrenylmethyl

Bn

benzyl

Bnf

fluorousbenzyl

Bno

tri-

n

-butylmethyl

Bnpeoc

2,2-bis(4′-nitrophenyl)ethoxycarbonyl

Bns

benzylsulfonate

BOB

Benzyloxybutyrate

BOC

t

-butoxycarbonyl

Bocdene

2-(

t

-butylcarbonyl)ethylidene

BOM

benzyloxymethyl, beer of the month

bpa

bispicolylamide

Bpoc

1-methyl-1-(4-biphenyl)ethoxycarbonyl

BSB

benzostabase

Bsmoc

1,1-dioxobenzo[

b

]thiophene-2-ylmethoxycarbonyl

BTM

t

-butylthiomethyl

Bts or Betsyl

benzothiazole-2-sulfonyl

B

t

SE

2-

t

-butylsulfonylethyl

Bts-Fmoc

2,7-bis(trimethylsilyl)fluorenylmethoxycarbonyl

Bum

t-

butoxymethyl

Bus

t

-butylsulfonyl

t-

Bumeoc

1-(3,5-di-

t

-butylphenyl)-1-methylethoxycarbonyl

Bz

benzoyl

Bz-NPPOC

2-(5-benzoyl-2-nitrophenyl)propyl

CAEB

2-[(2-chloroacetoxy)ethyl]benzoyl

Cam

carboxamidomethyl

CAMB

2-(chloroacetoxymethyl)benzoyl

Cbz or Z

benzyloxycarbonyl

CEM

2-cyanoethoxymethyl

CDA

cyclohexane-1,2-diacetal

CDM

2-cyano-1,1-dimethylethyl

CE or Cne

2-cyanoethyl

Cee

1-(2-chloroethoxy)ethyl

CEE

1-(2-cyanoethoxy)ethyl

Ceof

cyclic ethyl orthoformate

cHex

cyclohexyl

cHBS

di-

tert

-butyl(cyclohexyl)silyl

Chx

cyclohexyl

Cin

cinnamyl

ClAzab

4-azido-3-chlorobenzyl

Climoc

2-chloro-3-indenylmethoxycarbonyl

Cms

carboxymethylsulfenyl

CNAP

2-naphthylmethoxycarbonyl

Cne or CE

2-cyanoethyl

Coc

cinnamyloxycarbonyl

CPC

p

-chlorophenylcarbonyl

CPDMS

(3-cyanopropyl)dimethylsilyl

Cpeoc

2-(cyano-1-phenyl)ethoxycarbonyl

Cpep

1-(4-chlorophenyl)-4-methoxypiperidin-4-yl

CPTr

4,4′,4″-tris(4,5-dichlorophthalimido)triphenylmethyl

CTFB

4-trifluoromethylbenzyloxycarbonyl

CTMP

1-[(2-chloro-4-methyl)phenyl]-4-methoxypiperidin-4-yl

Cyclo-SEM

5-trimethylsilyl-1,3-dioxane

Cys

cysteine

DAM

di-

p

-anisylmethyl or bis(4-methoxyphenyl)methyl

2′-

O

-{[2,2-dimethyl-2-(2-nitrophenyl)acetyl]oxy}methyl

DATE

1,1-di-

p

-anisyl-2,2,2-trichloroethyl

DB-

t

-BOC

1,1-dimethyl-2,2-dibromoethoxycarbonyl

DBD-Tmoc–NR2

2,7-Di-

t

-butyl[9-(10,10-dioxo-10,10,10,10-tetrahydrothioxanthyl)]methyl Carbamate

DBS

dibenzosuberyl

DCP

dichlorophthalimide

Dcpm

dicyclopropylmethyl

Ddm or Dmbh

bis(4-methoxyphenyl)methyl

Dde

2-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethyl

Ddz

1-methyl-1-(3,5-dimethoxyphenyl)ethoxycarbonyl

DEABn

3-diethylaminobenzyl

DEAPE

1-(3-(diethylamino)phenyl)ethyl

DEM

diethoxymethyl

DEIPS

diethylisopropylsilyl

Desyl

2-oxo-1,2-diphenylethyl

Dim

1,3-dithianyl-2-methyl

DIMON

1,4-dimethoxynaphthalene-2-methylDMAdimethylacetamide

Dmab

4-{

N

-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)-3-methylbutyl]amino}benzyl

Dmaoc

N,N

-dimethylamonoxy

DMATr

(3-(dimethylamino)phenyl)diphenylmethyl

DMB

3′,5′-dimethoxybenzoin

Dmb

2,4-dimethoxybenzyl

DMBM

[(3,4-dimethoxybenzyl)oxy]methyl

dMDmoc

2-(1,3-dithian-2-yl)propan-2-yl

Dmepa

dimethylaminoethylpicolylamide

DMIPS

dimethylisopropylsilyl

DMN

2,3-dimethylmaleimide

Dmoc

dithianylmethoxycarbonyl

Dmp

2,4-dimethyl-3-pentyl

Dmp

dimethylphosphinyl

DMP

dimethoxyphenyl

dimethylphenacyl

DMPM

3,4-dimethoxybenzyl

DMTC

dimethylthiocarbamate

DMT or DMTr

di(

p

-methoxyphenyl)phenylmethyl or dimethoxytrityl

DMTr or DMT

di(

p

-methoxyphenyl)phenylmethyl or dimethoxytrityl

DNAP

2-(dimethylamino)-5-nitrophenyl

DNB

p

,

p

′-dinitrobenzhydryl

DNMBS

4-(4′,8′-dimethoxynaphthylmethyl)benzenesulfonyl

DNP

2,4-dinitrophenyl

Dnpe

2-(2,4-dinitrophenyl)ethyl

Dnpeoc

2-(2,4-dinitrophenyl)ethoxycarbonyl

DNs

2,4-dinitrobenzenesulfonyl

DNse

2-(2,4-dinitrophenylsulfonyl)ethoxycarbonyl

Dnseoc

2-dansylethoxycarbonyl

Dobz

p

-(dihydroxyboryl)benzyloxycarbonyl

Doc

2,4-dimethylpent-3-yloxycarbonyl

Dod

bis(4-methoxylphenyl)methyl

DOPS

dimethyl[1,1-dimethyl-3-(tetrahydro-2

H-

pyran-2-yloxy)propyl]silyl

DPA

diphenylacetyl

Dpaa

2-(di(pyridin-2-yl)amino)acetamide

DPIPS

diphenylisopropylsilyl

DPM or Dpm

diphenylmethyl

DPMS

diphenylmethylsilyl

Dpp

diphenylphosphinyl

Dppe

2-(diphenylphosphino)ethyl

Dppm

(diphenyl-4-pyridyl)methyl

DPSE

2-(methyldiphenylsilyl)ethyl

DPSide

diphenylsilyldiethylene

Dpt

diphenylphosphinothioyl

DPTBOS

t

-butoxydiphenylsilyl

DPTBS

diphenyl-

t

-butoxysilyl or

diphenyl-

t

-butylsilyl

Dtb-Fmoc

2,6-di-

t

-butyl-9-fluorenylmethoxycarbonyl

DTBMS

di-

t-

butylmethylsilyl

DTBS

di-

t

-butylsilylene

DTE

2-(hydroxyethyl)dithioethyl or “dithiodiethanol”

Dts

dithiasuccinimidyl

E-DMT

1,2-ethylene-3,3-bis(4′4″-dimethoxytrityl)EDTethane-1,2-dithiol

EE

1-ethoxyethyl

EOM

ethoxymethyl

Epin

1,1,2,2-Tetraethylethylene glycol

F

Cbz

fluorous benzyloxycarbonyl

Fcm

ferrocenylmethyl

Flu

fluorenyl

Fm

9-fluorenylmethyl

Fmoc

9-fluorenylmethoxycarbonyl

Fpmp

1-(2-fluorophenyl)-4-methoxypiperidiny-4-yl

Fsec

2-[4-fluorophenyl)-sulfonyl]ethyl

GUM

guaiacolmethyl

HAPE

1-[2-(2-hydroxyalkyl)phenyl]ethanone

HBn

2-hydroxybenzyl

Hdoc

hexadienyloxycarbonyl

HFB

hexafluoro-2-butyl

HFIA

dimethyl 2-(alkoxyoxymethoxy)isophthalate

HIP

1,1,1,3,3,3-hexafluoro-2-phenylisopropyl

Hoc

cyclohexyloxycarbonyl

HSDIS

(hydroxystyryl)diisopropylsilyl

HSDMS

(hydroxystyryl)dimethylsilyl

hZ or homo Z

homobenzyloxycarbonyl

ICPrc

3-isocyanopropyl

IDTr

3-(imidazol-1-ylmethyl)-4′,4″-dimethoxytriphenylmethyl

IETr

4,4′-dimethoxy-3″-[

N

-(imidazolylethyl)carbamoyl]trityl

iMds

2,6-dimethoxy-4-methylbenzenesulfonyl

Ipaoc

1-isopropylallyloxycarbonyl

Ipc

isopinocampheyl

IPDMS

isopropyldimethylsilylLEDLight emitting diode

Lev

levulinoyl

LevS

4,4-(ethylenedithio)pentanoyl

LevS

levulinoyldithioacetal ester

LMM

o

(

p

)NBz

6-(levulinyloxymethyl)-3-methoxy-2-nitrobenzoate

MAB

2-{{[(4-methoxytrityl)thio]methylamino}methyl}benzoate

MAQ

2-(9,10-anthraquinonyl)methyl or 2-methyleneanthraquinone

MBE

1-methyl-1-benzyloxyethyl

Mbh

bis(4-methylphenyl)methyl

mBhc

6-bromo-7-hydroxy-3-methyl-4-((alkylthio)methyl)-2

H

-chromen-2-one

MBF

2,3,3a,4,5,6,7,7a-octahydro-7,8,8-trimethyl-4,7-methanobenzofuran-2-yl

MBS or Mbs

p

-methoxybenzenesulfonyl

MCPM

1-Methyl-1′-cyclopropylmethyl

Mds

2,6-dimethyl-4-methoxybenzenesulfonyl

MDPS

methylene-bis-(diisopropylsilanoxanylidene

Me

methyl

ME

methoxyethyl

MEC

α-methylcinnamyl

Mee

methoxyethoxyethyl

MeOAc

methoxyacetate

MeO-CyHO

4-methoxy-(8-cyano-7-hydroxyquinolin-2-yl)methyl

MEM

2-methoxyethoxymethyl

Menpoc

α-methylnitropiperonyloxycarbonyl

MeO-NDBF

7-methoxy-2-(1-(alkylthio)ethyl)-3-nitrodibenzo[

b,d

]furan

MeOZ or Moz

p

-methoxybenzyloxycarbonyl

Mes

mesityl or 2,4,6-trimethylphenyl

MIP

methoxyisopropyl or 1-methyl-1-methoxyethyl

MM

menthoxymethyl

MMT or MMTr

p

-methoxyphenyldiphenylmethyl

MMTr or MMT

p

-methoxyphenyldiphenylmethyl

MMPPOC

2-(3,4-methylenedioxy-6-nitrophenypropyloxycarbonyl

Mmsb

3-methoxy-4-methylsufinylbenzyl

MNPPOC

2-(3,4-methylenedioxy-6-nitrophenylpropyl

MOB

2-{[(4-methoxytritylthio)oxy]methyl}benzoate

Mocdene

2-(methoxycarbonyl)ethylidene

MoEt

2-

N

-(Morpholino)ethyl

MOM

methoxymethyl

MOMO

methoxymethoxy

Moz or MeOZ

p

-methoxybenzyloxycarbonyl

MP

p

-methoxyphenyl

Mpe

3-methyl-3-pentyl

MPM or PMB

p

-methoxyphenylmethyl or

p

-methoxybenzyl

Mps

p-

methoxyphenylsulfonyl

Mpt

dimethylphosphinothioyl

Ms

methanesulfonyl or mesyl

MSE

2-(methylsulfonyl)ethyl

Msib

4-(methylsulfinyl)benzyl

Mspoc

2-methylsulfonyl-3-phenyl-1-prop-2-enyloxy

Msz

4-methylsulfinylbenzyloxycarbonyl

MTAD

4-methyl-1,2,4-triazoline-3,5-dione

Mtb

2,4,6-trimethoxybenzenesulfonyl

Mte

2,3,5,6-tetramethyl-4-methoxybenzenesulfonyl

MTHP

4-methoxytetrahydropyranyl

MTM

methylthiomethyl

MTMB

4-(methylthiomethoxy)butyryl

MTMECO

2-(methylthiomethoxy)ethoxycarbonyl

MTMT

2-(methylthiomethoxymethyl)benzoyl

Mtpc

4-(methylthio)phenoxycarbonyl

Mtr

2,3,6-trimethyl-4-methoxybenzenesulfonyl

Mts

2,4,6-trimethylbenzenesulfonyl or Mesitylenesulfonyl

Mtt

4-methoxytrityl

4-methyltrityl

Nap

2-napthylmethyl

NAPOM

2-naphthylmethoxymethyl

NBOM

nitrobenzyloxymethyl

NBM

nitrobenzyloxymethyl

NDBF

2-(1-(alkylthio)ethyl)-3-nitrodibenzo[

b,d

]furan

NDMS

2-norbornyldiemethylsilyl

Ne

2-nitroethyl

NNM

3-nitro-2-naphthylmethyl

Noc

4-nitrocinnamyloxycarbonyl

Nosyl or Ns

2- or 4-nitrobenzenesulfonyl

Npb

3-(2-nitrophenyl)butan-2-ol

Npe or npe

2-(nitrophenyl)ethyl

Npeoc

2-(4-nitrophenyl)ethoxycarbonyl

Npeom

[1-(2-nitrophenyl)ethoxy]methyl

Npes

2-(4-nitrophenyl)ethylsulfonyl

Nph

6-hydroxy-5-(2-nitrophenyl)heptanoic

Npp

2-(2-nitrophenyl)propyl

NPPOC

2-(2-nitrophenyl)propyloxycarbonyl

NPS or Nps

2-nitrophenylsulfenyl

NpSSPeoc

2-[(2-nitrophenyl)dithio]-1-phenylethoxycarbonyl

Npys

3-nitro-2-pyridinesulfenyl

Ns or Nosyl

2- or 4-nitrobenzenesulfonyl

Nse

2-(4-nitrophenylsulfonyl)ethoxycarbonyl

NVOC or Nvoc

3,4-dimethoxy-6-nitrobenzyloxycarbonyl or 6-nitroveratryloxycarbonyl

OBO

2,6,7-trioxabicyclo[2.2.2]octyl

O-DMT

3,3′-oxybis(dimethoxytrityl)

ONB

o

-nitrobenzyl

oNv

(4,5-dimethoxy-2-nitrophenyl)methylthio

PAB

p

-acylaminobenzyl

PAB

acetoxybenzyl

PAC

H

2-[2-(benzyloxy)ethyl]benzoyl

PAC

M

2-[2-(4-

methoxybenzyloxy)ethyl]benzoyl

Paloc

3-(3-pyridyl)allyloxycarbonyl or

3-(3-pyridyl)prop-2-enyloxycarbonyl

Pbf

2,2,4,6,7-pentamethyldihydrobenzofuran-5-sulfonyl

PDNO

2,6-pyridinedicarboxylic acid

N

-oxide

PeNB

pentadienylnitrobenzyl

PeNP

pentadienylnitropiperonyl

Peoc

2-phosphonioethoxycarbonyl

Peoc

2-(triphenylphosphonio)ethoxycarbonyl

Pet

2-(2′-pyridyl)ethyl

Pf

9-phenylfluorenyl

Pfp

pentafluoropenyl

Phamc

phenylacetamidomethyl

PhAc

4-phenylacetoxybenzyloxycarbonyl

Phedec

phenyldithioethyl

Phenoc

4-methoxyphenacyloxycarbonyl

PhS-NPPOC

2-(4-ethyl-2-nitro-5-(phenylthio)phenyl)propyl

Pic

picolinate

Pim

phthalimidomethyl

PIP

2-(piperidine-1-yl)-ethyl

Piv

pivaloyl

Pixyl or Px

9-(9-phenyl)xanthenyl

PMB or MPM

p

-methoxybenzyl or

p

-methoxyphenylmethyl

PMBM

p

-methoxybenzyloxymethyl

Pmc

2,2,5,7,8-pentamethylchroman-6-sulfonyl

pMCB

4-(alkoxymethyl)benzoate

Pme

pentamethylbenzenesulfonyl

PMNB

2-(4′-methoxy-4-nitro-[1,1′-biphenyl]-3-yl)propan-1-ol

PMP

p

-methoxyphenyl

PMS

p

-methylbenzylsulfonyl

Pms

2-[phenyl(methyl)sulfonio]ethoxycarbonyl

PNB

p

-nitrobenzyl

p

-nitrobenzoate

p

NBZ

p

-nitrobenzoate

PNP

p

-nitrophenyl

PNPE

2-(4-nitrophenyl)ethyl

PNZ

p

-nitrobenzylcarbonyl

POC

propargyloxycarbonyl

POM

4-pentenyloxymethyl

POM

pivaloyloxymethyl

POM

[(

p

-phenylphenyl)oxy]methyl

POMB

2-(prenyloxy)methylbenzoate

Ppoc

2-triphenylphosphonioisopropoxycarbonyl

Pp

2-phenyl-2-propyl

Ppt

diphenylthiophosphinyl

Pre

prenyl

Preoc

prenyloxycarbonyl

Proc or Poc

propargyloxycarbonyl

PSB

p

-siletanylbenzyl

PSE

2-(phenylsulfonyl)ethyl

Psoc

(2-phenyl-2-trimethylsilyl)ethoxycarbonyl

Psec

2-(phenylsulfonyl)ethoxycarbonyl

PTE

2-(4-nitrophenyl)thioethyl

PTM

phenylthiomethyl

PTMSE

(2-phenyl-2-trimethylsilyl)ethyl

Pv

pivaloyl

Px or pixyl

9-(9-phenyl)xanthenyl

Pydec

2-pyridyldithioethyl

Pyet

1-(α-pyridyl)ethyl

Pyoc

2-(2′- or 4′-pyridyl)ethoxycarbonyl

Qn

2-quinolinylmethyl

Qm

2-quinolinylmethyl

QUI

4-quinolinylmethyl

SATE

S

-acetylthioethyl

Scm

S

-carboxymethylsulfenyl

SEE

1-[2-(trimethylsilyl)ethoxy]ethyl

SEM

2-(trimethylsilyl)ethoxymethyl

SES

2-(trimethylsilyl)ethanesulfonyl

SIBA

1,1,4,4-tetraphenyl-1,4-disilanylidene

Sisyl

tris(trimethylsilyl)silyl

SMOM

(phenyldimethylsilyl)methoxymethyl

Snm

S

-(

N

′-methyl-

N

′-phenylcarbamoyl)sulfenyl

SOB

4-trialkylsilyloxybutyrate

STABASE

1,1,4,4-tetramethyldisilylazacyclopentane

TAB

2-{[(methyl(tritylthio)amino]methyl}benzoate

Tacm

trimethylacetamidomethyl

TBDMS or TBS

t

-butyldimethylsilyl

TBDPS

t-

butyldiphenylsilyl

Tbf-DMTr

4-(17-tetrabenzo[

a

,

c

,

g

,

i

]fluorenylmethyl-4′,4″-dimethoxytrityl

Tbfmoc

17-tetrabenzo[

a

,

c

,

g

,

i

]fluorenylmethoxycarbonyl

TBDPSE

t

-butyldiphenylsilylethyl

TBDS

tetra-

t-

butoxydisiloxane-1,3-diylidene

Tbe

2-(

tert

-Butyldisulfaneyl)ethyl

TBMPS

t

-butylmethoxyphenylsilyl

TBS or TBDMS

t

-butyldimethylsilyl

TBTr

4,4′,4″-tris(benzyloxy)triphenylmethyl

TCB

2,2,2-trichloro-1,1-dimethylethyl

TcBOC

1,1-dimethyl-2,2,2-trichloroethoxycarbonyl

TCP

N

-tetrachlorophthalimido

Tcroc

2-(trifluoromethyl)-6-chromonylmethyleneoxycarbonyl

Tcrom

2-(trifluoromethyl)-6-chromonylmethylene

TDE

(2,2,2-trifluoro-1,1-diphenyl)ethyl

TDG

thiodiglycoloyl

TDS

thexyldimethylsilyl

tris(2,6-diphenylbenzyl)silyl

Tempoc

2,2,6,6-tetramethylpiperidin-1-yloxy

Teoc

2-(trimethylsilyl)ethoxycarbonyl

TES

triethylsilyl

Tf

trifluoromethanesulfonyl

TFA

trifluoroacetyl

Tfacm

S

-trifluoroacetamidomethyl

Tfav

4,4,4-trifluoro-3-oxo-1-butenyl

Tfe-Pocam

S-N

-trifluoromethylphenyacyloxycarbamidomethyl

Thexyl

2,3-dimethyl-2-butyl

THF

tetrahydrofuranyl

THP

tetrahydropyranyl

TIBS

triisobutylsilyl

TIPDS

1,3-(1,1,3,3-tetraisopropyldisiloxanylidene)

TIPS

TriisopropylsilylTIPSHtriisopropylsilane

TIX

trimethylsilylxylyl

TLTr

4,4′,4″-tris(levulinoyloxy)triphenylmethyl

Tmb

2,4,6-trimethylbenzyl

Tmob

trimethoxybenzyl

TMPM

trimethoxyphenylmethyl

TMS

trimethylsilyl

Tms

(2-methyl-2-trimethylsilyl)ethyl

TMSE or TSE

2-(trimethylsilyl)ethyl

TMSEC

2-(trimethylsilyl)ethoxycarbonylTMSItrimethylsilyliodide

TMSP

2-trimethylsilylprop-2-enyl

TMTr

tris(

p

-methoxyphenyl)methyl

TOB

2-{[(tritylthio)oxy]methyl}benzoate

Tos or Ts

p

-toluenesulfonyl

Tom

triisopropylsilyloxymethyl

TPS

triphenylsilyl

TPTE

2-(4-triphenylmethylthio)ethyl

Tr

triphenylmethyl or trityl

TrtF

7

2,3,4,4′,4″,5,6-heptafluorotriphenylmethyl

Tritylone

9-(9-phenyl-10-oxo)anthryl

Troc

2,2,2-trichloroethoxycarbonyl

Ts or Tos

p

-toluenesulfonyl

Tsc

2-(4-trifluoromethylphenylsulfonyl)ethoxycarbonyl

TSE or TMSE

2-(trimethylsilyl)ethyl

Tse

2-(

p-

toluenesulfonyl)ethyl

Tsoc

triisopropylsiloxycarbonyl

Tsv

p

-toluenesulfonylvinyl

VeZ

3-methoxy-4-(vinyloxy)benzyl

Voc

vinyloxycarbonyl

Xan

xanthenyl

Z or Cbz

benzyloxycarbonyl

ABBREVIATIONS REAGENTS

9-BBN

9-borabicyclo[3.3.1]nonane

bipy

2,2′-bipyridine

BOP reagent

benzotriazol-1-yloxytris(dimethylamino)phosphonium

hexafluorophosphate

BOP-Cl

Bis(2-oxo-3-oxazolidinyl)phosphinic chloride

BroP

bromotris(dimethylamino)phosphonium

hexafluorophosphate

Bt

benzotriazol-1-yl or 1-benzotriazolyl

BTEAC

benzyltriethylammonium chloride

CAL

Candida antarctica lipase

CAN

ceric ammonium nitrate

CMPI

2-chloro-1-methylpyridinium iodide

cod

cyclooctadiene

cot

cyclooctatetraene

CSA

camphorsulfonic acid

DABCO

1,4-diazabicyclo[2.2.2]octane

DBN

1,5-diazabicyclo[4.3.0]non-5-ene

DBAD

di

-t

-butyl azodicarboxylate

DBU

1,8-diazabicyclo[5.4.0]undec-7-ene

DCC

dicyclohexylcarbodiimide

DDQ

2,3-dichloro-5,6-dicyano-1,4-benzoquinone

DEAD

diethyl azodicarboxylate

DIAD

diisopropyl azodicarboxylate

DIBAL-H

diisobutylaluminum hydride

DIPEA

diisopropylethylamine

DMAC

N,N

-dimethylacetamide

DMAP

4-

N,N

-dimethylaminopyridine

DMB

2,4-dimethoxybenzyl

DMDO

2,2-dimethyldioxirane

DME

1,2-dimethoxyethane

DMF

N,N

-dimethylformamide

DMPU

1,3-dimethyl-3,4,5,6-tetrahydro-2(1

H

)-pyrimidinone

DMS

dimethyl sulfide

DMSO

dimethyl sulfoxide

dppb

1,4-bis(diphenylphosphino)butane

dppe

1,2-bis(diphenylphosphino)ethane

DTE

dithioerythritol

DTT

dithiothreitol

EDC or EDCI

1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (or

1-[3-(dimethylamino)propyl]-3-ethylcarbodimide) hydrochloride

EDCI or EDC

1-ethyl-3-(3-(dimethylaminopropyl)carbodiimide

EDTA

ethylenediaminetetraacetic acid

HATU

N

-[(dimethylamino)(3

H

-1,2,3-triazolo(4,5-

b

)pyridin-3-yloxy)methylene]-

N-

methylmethanaminium hexafluorophosphate, previously known as

O

-(7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate.

HFIP

hexafluorisopropyl

HMDS

1,1,1,3,3,3-hexamethyldisilazane

HMPA

hexamethylphosphoramide

HMPT

hexamethylphosphorous triamide

HOAt

7-aza-1-hydroxybenzotriazole

HOBT

1-hydroxybenzotriazole

Im

imidazol-1-yl or 1-imidazolyl

IPA

isopropyl alcohol

IPCF (=IPCC)

isopropenyl chloroformate (isopropenyl chlorocarbonate)

KHMDS

potassium hexamethyldisilazide

LAH

lithium aluminum hydride

LDBB

lithium 4,4′-di-

t

-butylbiphenylide

MAD

methylaluminumbis(2,6-di-

t

-butyl-4-methylphenoxide

MCPBA

m

-chloroperoxybenzoic acid

MoOPH

oxodiperoxymolybdenum(pyridine)hexamethylphosphoramide

MS

molecular sieves

MSA

methanesulfonic acid

MTB

methylthiobenzene

MTBE

t

-butyl methyl ether

NBS

N

-bromosuccinimide

Ni(acac)

2

nickel acetylacetonate

NMM

N

-methylmorpholine

NMO

N

-methylmorpholine

N

-oxide

NMP

N

-methylpyrrolidinone

P

polymer support

Pc

phthalocyanine

PCC

pyridinium chlorochromate

PdCl

2

(tpp)

2

dichlorobis[tris(2-methylphenyl)phosphine]palladium

Pd

2

(dba)

3

tris(dibenzylideneacetone)dipalladium

PG

protective group

PhI(OH)OTs

[hydroxy(tosyloxy)iodo]benzene

PPL

porcine pancreatic lipase

PPTS

pyridinium

p

-toluenesulfonate

proton sponge

1,8-bis(dimethylamino)naphthalene

Pyr

pyridine

Rh

2

(pfb)

4

rhodium perfluorobutyrate

ScmCl

methoxycarbonylsulfenyl chloride

SMEAH

sodium bis(2-methoxyethoxy)aluminum hydride

Su

succinimidyl

TAS-F

tris(dimethylamino)sulfonium difluorotrimethylsilicate

TBAF

tetrabutylammonium fluoride

TEA

triethylamine

TEBA or TEBAC

triethylbenzylammonium chloride

TEBAC or TEBA

triethylbenzylammonium chloride

TESH

triethylsilane

Tf

trifluoromethanesulfonyl

TFA

trifluoroacetic acid

TFAA

trifluoroacetic anhydride

TFMSA or TfOH

trifluoromethanesulfonic acid

TfOH or TFMSA

trifluoromethanesulfonic acid

THF

tetrahydrofuran

THP

tetrahydropyran

TMEDA

N,N,N″,N″

-tetramethylethylenediamine

TMOF

trimethyl orthoformate

TPAP

tetrapropylammonium perruthenate

TPP

tetraphenylporphyrin

TPPTS

sulfonated triphenylphosphine

TPS

triisopropylbenzensulfonyl chloride

Tr

+

BF

4

or Ph

3

C

+

BF

4

triphenylcarbenium tetrafluoroborate

TrS

Bu

4

N

+

tetrabutylammonium triphenylmethanethiolate

Ts

toluenesulfonyl